Dennis Schmitz

icon indicating a website link https://www.rivm.nl/en/international

icon company Center for Infectious Disease Control icon location Netherlands icon location Bioinformatician at the Dutch National Institute for Public Health and the Environment (RIVM) and Erasmus Medical Center (EMC) | Data Carpentries Instructor

Results 15 issues of Dennis Schmitz

Improvement: Add bitscore and query scaffold coverage to taxonomic classification output

Sometimes the taxonomic classification is based on only a very small (

enhancement

Addition of PostgreSQL and individual tables in order to collect data from all Jovian runs

**This FeatureRequest was originally posted by @florianzwagemaker on the internal GitLab repo. Transferring it to GitHub.** In order to collect data from _all_ Jovian runs, a sql-based database is necessary...

enhancement

MultiQC: confusing values

1 comment

MultiQC is used to collate as many of the logs as possible in the pipeline. However, the summary table is a bit verbose since it puts the HuGo alignment, pre-trimming...

bug
help wanted

Use codon usage information to infer host

Feature request from Harry: There is a database containing codon usage per organism and/or gene at http://www.kazusa.or.jp/codon/ . Can we distill the per organism codon usage from it and use...

enhancement
help wanted

Increase accepted query length of Description Extractor to 10 or 30kb?

Thank you for this great tool. I'm using the Description Extractor tool for ad hoc comparisons of virus genes. I was wondering if the accepted query length of the Description...