iScore
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DeepRank
iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines
Hi, thanks for the great work! I am wondering which results are the final iScore. Is it the last column in ScorePredict.dat? Many thanks :)
**Describe the bug** A clear and concise description of what the bug is. UnpicklingError: could not find MARK occurs when attempting to run iScore.predict using the trained model. **Environment:** -...
Docs should be updated to be consistent with the code of version 0.3.4. - [ ] update the tutorial - [ ] update how to use commands and python modules...
**Describe the bug** On Windows the path of all the pdbs generated in loadData.py should contain double back slash in the path : C:\\Users\\Name\\ ..... instead of single ones. Also...
Can we make pssm mapping to pdb as default in iScore? Otherwise, it is very buggy...
There are 4 steps in total: 1. download psiblast. 2. download the blast nr database (we can provide it so that the results are reproducible). 3. run psiblast to generate...
In `GraphRank.dat` file, it currently reports:`#Name label pred decision_value ` Could we report: `#Name label pred decision_value GraphRank_score`, where we make sure the `GraphRank_score` is the lower the better. In...
According to Cunliang, here are the differences: 1. max walk length: `4` v.s. `3` 2. SVM training parameters `svm_parameter('-t 4 -c 4 -b 1')` v.s. `svm_parameter('-t 4 -c 1 -b...