Refactor duplicate code

[DaniBodor]

• utils/graph.py: build_atomic_graph / build_residue_graph

• features/surfacearea.py:

  • add_sasa_for_residues and add_sasa_for_atoms
  • add_sasa and and_bsa can be fused
  • test_surfacearea has duplicate code

• query.py:

  • SingleResidueVariantResidueQuery and SingleResidueVariantAtomicQuery
  • ProteinProteinInterfaceAtomicQuery and ProteinProteinInterfaceResidueQuery
  • also check for overlapping code between SingleResidueVariant and ProteinProteinInterface type classes

• likely in other places as well

  • there's often duplicate code for atomic and residue level graphs

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[github-actions[bot]]

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[github-actions[bot]]

This issue was closed because it has been inactive for 7 days since being marked as stale.

[DaniBodor]

was automatically closed, but not done. I will reopen it now