deeprank

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LilySnow

tnr.png and tnr.png do not give much information as they do not reflect common cut-offs for deeprank scores. ROC curve is the combination of these two and is more informative.

LilySnow

pdb2sql is now a stand-alone package, while in the advanced tutorial and in the `tools/REAMDE.md` is still reported as a deeprank module. I have corrected the tutorial and removed the...

DarioMarzella

ROC curves as Fig. S_XX

1

For the classification performance of HS vs. DR

LilySnow

Redo Figure 2

4

We need a better representation of the crystal and the two types of interface for figure 2. Maybe a schematic of crystal versus biological would be good since we targeting...

NicoRenaud

LilySnow

LilySnow

put train scripts on github and data somewhere?

2

We need to put the training scripts of Francesco and Sonja in the examples folder in the repo. Thinks if the training/val/test pdb files can be uploaded somewhere

sonjageorgievska

Redo Figure 3

3

I think the histogram and the results should be redrawn. For the results it might be best to only plot the results on the test set for different scenario and...

NicoRenaud

LilySnow