DeepLabCut
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Published
20 hours ago •
DeepLabCut
DeepLabCut
Transition from wxpython to PySide2 project management GUI
This PR presents a new project management GUI and labeling, re-refining, and video GUIs.
- NOTE, this PR will therefore drop support for python 3.7 due to python 3.8 requirements for dlc-napari gui. This could cause issues for macbook M1 chip users, as our conda file for M1 currently relies on 3.7 and thus will need modifications.
To test this branch, please git clone the repo and run git checkout new_gui.
Built a test env:
conda create --name DEEPLABCUT_newGUI python=3.9
then activate the env. conda activate DEEPLABCUT_newGUI
Then run:
pip install -e '.[docs,gui]'
then to launch the GUI:
python -m deeplabcut
TODOs:
- [x] fix failing build:
/opt/hostedtoolcache/Python/3.9.13/x64/deeplabcut
copying deeplabcut/gui/media/logo.png -> /opt/hostedtoolcache/Python/3.9.13/x64/deeplabcut
copying deeplabcut/gui/media/dlc_1-01.png -> /opt/hostedtoolcache/Python/3.9.13/x64/deeplabcut
error: can't copy 'deeplabcut/gui/assets/*.png': doesn't exist or not a regular file
[end of output]
- [ ] create_training_dataset not actually creating a training dataset from GUI tab.
- [ ] kmeans runs and hangs for a long time; then crashes GUI (macOS 12.5.1 non-M1 chip)
@MMathisLab, I followed the instructions above (new env w/ py3.10) and had no problem with either clustering or dataset creation (both with single- and multi-animal projects) 🤔
conda env create -f conda-environments/DEEPLABCUT.yaml does not work for me though, installing dependencies never completes.
seems across PRs create_video is failing; must be a new change?
4m 40s
Tracklets created...
Processing... /home/runner/work/DeepLabCut/DeepLabCut/multi_mouse-dlc_team-2022-10-04/videos/m3v1mp4short.mp4
100%|██████████| 3/3 [00:00<00:00, 48026.38it/s]
Plotting trajectories...
Loading /home/runner/work/DeepLabCut/DeepLabCut/multi_mouse-dlc_team-2022-10-04/videos/m3v1mp4short.mp4 and data.
Plots created! Please check the directory "plot-poses" within the video directory
Trajectory plotted.
Creating labeled video...
Starting to process video: /home/runner/work/DeepLabCut/DeepLabCut/multi_mouse-dlc_team-2022-10-04/videos/m3v1mp4short.mp4
Loading /home/runner/work/DeepLabCut/DeepLabCut/multi_mouse-dlc_team-2022-10-04/videos/m3v1mp4short.mp4 and data.
Duration of video [s]: 1.03, recorded with 30.0 fps!
Overall # of frames: 31 with cropped frame dimensions: 640 480
Generating frames and creating video.
0%| | 0/31 [00:00<?, ?it/s]
0%| | 0/31 [00:00<?, ?it/s]multiprocessing.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.8.14/x64/lib/python3.8/multiprocessing/pool.py", line 125, in worker
result = (True, func(*args, **kwds))
File "/opt/hostedtoolcache/Python/3.8.14/x64/lib/python3.8/multiprocessing/pool.py", line 48, in mapstar
return list(map(*args))
File "/opt/hostedtoolcache/Python/3.8.14/x64/lib/python3.8/site-packages/deeplabcut/utils/make_labeled_video.py", line 721, in proc_video
_create_labeled_video(
File "/opt/hostedtoolcache/Python/3.8.14/x64/lib/python3.8/site-packages/deeplabcut/utils/make_labeled_video.py", line 796, in _create_labeled_video
CreateVideo(
File "/opt/hostedtoolcache/Python/3.8.14/x64/lib/python3.8/site-packages/deeplabcut/utils/make_labeled_video.py", line 168, in CreateVideo
color = colors[num_ind]
IndexError: index 6 is out of bounds for axis 0 with size 4
"""
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "examples/testscript_multianimal.py", line 200, in <module>
deeplabcut.create_labeled_video(
File "/opt/hostedtoolcache/Python/3.8.14/x64/lib/python3.8/site-packages/deeplabcut/utils/make_labeled_video.py", line 580, in create_labeled_video
pool.map(func, Videos)
File "/opt/hostedtoolcache/Python/3.8.14/x64/lib/python3.8/multiprocessing/pool.py", line 364, in map
return self._map_async(func, iterable, mapstar, chunksize).get()
File "/opt/hostedtoolcache/Python/3.8.14/x64/lib/python3.8/multiprocessing/pool.py", line 771, in get
raise self._value
IndexError: index 6 is out of bounds for axis 0 with size 4
I suggest we merge and make a rc1 release; I can confirm this works beautifully on my preM1 build for now :)
I installed using the instructions at the top, on Windows, without a problem. Quickly opened an existing project. A couple of notes:
- A built in quick config editor?! This is great. VERY SMALL bug/issue: If I expand an item (e.g. video_sets), I can't see the Value column for any of the other items until I collapse that set. There might not be anything you can do about it.
- Label Frames: Selected a folder to label, but no window opened. Got the following error in terminal:
Traceback (most recent call last):
File "C:\Users\jacksonbe3\Documents\repos\DeepLabCut\deeplabcut\gui\tabs\label_frames.py", line 45, in label_frames
_ = launch_napari(folder)
File "C:\Users\jacksonbe3\Documents\repos\DeepLabCut\deeplabcut\gui\widgets.py", line 28, in launch_napari
viewer = napari.Viewer()
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\lib\site-packages\napari\_lazy.py", line 47, in __getattr__
submod = import_module(f'{module_name}.{attr_to_modules[name]}')
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\lib\importlib\__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 850, in exec_module
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\lib\site-packages\napari\viewer.py", line 8, in <module>
from .components.viewer_model import ViewerModel
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\Lib\site-packages\shiboken2\files.dir\shibokensupport\__feature__.py", line 142, in _import
return original_import(name, *args, **kwargs)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\lib\site-packages\napari\components\__init__.py", line 24, in <module>
from . import _viewer_key_bindings # isort:skip
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\Lib\site-packages\shiboken2\files.dir\shibokensupport\__feature__.py", line 142, in _import
return original_import(name, *args, **kwargs)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\lib\site-packages\napari\components\_viewer_key_bindings.py", line 9, in <module>
from .viewer_model import ViewerModel
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\Lib\site-packages\shiboken2\files.dir\shibokensupport\__feature__.py", line 142, in _import
return original_import(name, *args, **kwargs)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\lib\site-packages\napari\components\viewer_model.py", line 34, in <module> from ..plugins.utils import get_potential_readers, get_preferred_reader
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\Lib\site-packages\shiboken2\files.dir\shibokensupport\__feature__.py", line 142, in _import
return original_import(name, *args, **kwargs)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\lib\site-packages\napari\plugins\__init__.py", line 10, in <module>
from ._plugin_manager import NapariPluginManager
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\Lib\site-packages\shiboken2\files.dir\shibokensupport\__feature__.py", line 142, in _import
return original_import(name, *args, **kwargs)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\lib\site-packages\napari\plugins\_plugin_manager.py", line 34, in <module> from . import _builtins, hook_specifications
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\Lib\site-packages\shiboken2\files.dir\shibokensupport\__feature__.py", line 142, in _import
return original_import(name, *args, **kwargs)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\lib\site-packages\napari\plugins\_builtins.py", line 18, in <module>
from ..utils.io import (
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\Lib\site-packages\shiboken2\files.dir\shibokensupport\__feature__.py", line 142, in _import
return original_import(name, *args, **kwargs)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\lib\site-packages\napari\utils\io.py", line 27, in <module>
IMAGEIO_EXTENSIONS = {x for f in imageio.formats for x in f.extensions}
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\lib\site-packages\napari\utils\io.py", line 27, in <setcomp>
IMAGEIO_EXTENSIONS = {x for f in imageio.formats for x in f.extensions}
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\lib\site-packages\imageio\core\format.py", line 640, in <genexpr>
return iter(x.format for x in self._formats)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\lib\site-packages\imageio\config\plugins.py", line 85, in format
module = importlib.import_module(self.module_name, self.package_name)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\lib\importlib\__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\lib\site-packages\imageio\plugins\ffmpeg.py", line 136, in <module>
import imageio_ffmpeg
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newGUI\Lib\site-packages\shiboken2\files.dir\shibokensupport\__feature__.py", line 142, in _import
return original_import(name, *args, **kwargs)
ModuleNotFoundError: No module named 'imageio_ffmpeg'
- Napari window opened, but I got a pytables error. tables had been installed in the env with pip, ran
conda install pytables- which of course also "updated" numpy and other modules. - After that, napari window opens and image shows, but no data points show (these are already labeled). with the following traceback.
Traceback (most recent call last):
File "C:\Users\jacksonbe3\Documents\repos\DeepLabCut\deeplabcut\gui\tabs\label_frames.py", line 45, in label_frames
_ = launch_napari(folder)
File "C:\Users\jacksonbe3\Documents\repos\DeepLabCut\deeplabcut\gui\widgets.py", line 35, in launch_napari
viewer.open(files, plugin='napari-deeplabcut')
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newgui\lib\site-packages\napari\components\viewer_model.py", line 931, in open
self._add_layers_with_plugins(
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newgui\lib\site-packages\napari\components\viewer_model.py", line 1160, in _add_layers_with_plugins
added.extend(self._add_layer_from_data(*_data))
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newgui\lib\site-packages\napari\components\viewer_model.py", line 1234, in _add_layer_from_data
layer = add_method(data, **(meta or {}))
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newgui\lib\site-packages\napari\components\viewer_model.py", line 5, in add_points
import os
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newgui\lib\_collections_abc.py", line 1073, in append
self.insert(len(self), value)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newgui\lib\site-packages\napari\components\layerlist.py", line 135, in insert
super().insert(index, new_layer)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newgui\lib\site-packages\napari\utils\events\containers\_selectable_list.py", line 65, in insert
super().insert(index, value)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newgui\lib\site-packages\napari\utils\events\containers\_evented_list.py", line 183, in insert
self.events.inserted(index=index, value=value)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newgui\lib\site-packages\napari\utils\events\event.py", line 757, in __call__
self._invoke_callback(cb, event if pass_event else None)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newgui\lib\site-packages\napari\utils\events\event.py", line 794, in _invoke_callback
_handle_exception(
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newgui\lib\site-packages\napari\utils\events\event.py", line 781, in _invoke_callback
cb(event)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newgui\lib\site-packages\napari_deeplabcut\_widgets.py", line 435, in on_insert
self._remap_frame_indices(layer_)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newgui\lib\site-packages\napari_deeplabcut\_widgets.py", line 379, in _remap_frame_indices
data[:, 0] = np.vectorize(temp.get)(data[:, 0])
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newgui\lib\site-packages\numpy\lib\function_base.py", line 2328, in __call__
return self._vectorize_call(func=func, args=vargs)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newgui\lib\site-packages\numpy\lib\function_base.py", line 2406, in _vectorize_call
ufunc, otypes = self._get_ufunc_and_otypes(func=func, args=args)
File "C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newgui\lib\site-packages\numpy\lib\function_base.py", line 2362, in _get_ufunc_and_otypes
raise ValueError('cannot call `vectorize` on size 0 inputs '
ValueError: cannot call `vectorize` on size 0 inputs unless `otypes` is set
It is not. I ran it on the output of testscript.py and got the same error on both reachingvideo (old format of CollectedData) and reachingvideoshort (new format of CollectedData).
env build details:
# packages in environment at C:\Users\jacksonbe3\Miniconda3\envs\DEEPLABCUT_newgui:
#
# Name Version Build Channel
absl-py 1.2.0 pypi_0 pypi
alabaster 0.7.12 pypi_0 pypi
appdirs 1.4.4 pypi_0 pypi
asttokens 2.0.8 pypi_0 pypi
astunparse 1.6.3 pypi_0 pypi
attrs 22.1.0 pypi_0 pypi
babel 2.10.3 pypi_0 pypi
backcall 0.2.0 pypi_0 pypi
blas 1.0 mkl
blosc 1.21.0 h19a0ad4_1
build 0.8.0 pypi_0 pypi
bzip2 1.0.8 he774522_0
ca-certificates 2022.07.19 haa95532_0
cachetools 5.2.0 pypi_0 pypi
cachey 0.2.1 pypi_0 pypi
certifi 2022.9.14 py39haa95532_0
charset-normalizer 2.1.1 pypi_0 pypi
click 8.1.3 pypi_0 pypi
cloudpickle 2.2.0 pypi_0 pypi
colorama 0.4.5 pypi_0 pypi
commonmark 0.9.1 pypi_0 pypi
contourpy 1.0.5 pypi_0 pypi
cycler 0.11.0 pypi_0 pypi
dask 2022.9.2 pypi_0 pypi
dask-image 2022.9.0 pypi_0 pypi
debugpy 1.6.3 pypi_0 pypi
decorator 5.1.1 pypi_0 pypi
deeplabcut 2.2.2 dev_0 <develop>
docstring-parser 0.15 pypi_0 pypi
docutils 0.19 pypi_0 pypi
entrypoints 0.4 pypi_0 pypi
executing 1.1.0 pypi_0 pypi
filterpy 1.4.5 pypi_0 pypi
flatbuffers 22.9.24 pypi_0 pypi
fonttools 4.37.4 pypi_0 pypi
freetype-py 2.3.0 pypi_0 pypi
fsspec 2022.8.2 pypi_0 pypi
gast 0.4.0 pypi_0 pypi
google-auth 2.12.0 pypi_0 pypi
google-auth-oauthlib 0.4.6 pypi_0 pypi
google-pasta 0.2.0 pypi_0 pypi
grpcio 1.49.1 pypi_0 pypi
h5py 3.7.0 pypi_0 pypi
hdf5 1.12.0 h1756f20_0
heapdict 1.0.1 pypi_0 pypi
hsluv 5.0.3 pypi_0 pypi
icc_rt 2022.1.0 h6049295_2
idna 3.4 pypi_0 pypi
imageio 2.22.1 pypi_0 pypi
imageio-ffmpeg 0.4.7 pypi_0 pypi
imagesize 1.4.1 pypi_0 pypi
imgaug 0.4.0 pypi_0 pypi
importlib-metadata 5.0.0 pypi_0 pypi
intel-openmp 2021.4.0 haa95532_3556
ipykernel 6.16.0 pypi_0 pypi
ipython 8.5.0 pypi_0 pypi
ipython-genutils 0.2.0 pypi_0 pypi
jedi 0.18.1 pypi_0 pypi
jinja2 3.1.2 pypi_0 pypi
joblib 1.2.0 pypi_0 pypi
jsonschema 4.16.0 pypi_0 pypi
jupyter-client 7.3.5 pypi_0 pypi
jupyter-core 4.11.1 pypi_0 pypi
keras 2.10.0 pypi_0 pypi
keras-preprocessing 1.1.2 pypi_0 pypi
kiwisolver 1.4.4 pypi_0 pypi
libclang 14.0.6 pypi_0 pypi
llvmlite 0.39.1 pypi_0 pypi
locket 1.0.0 pypi_0 pypi
lz4-c 1.9.3 h2bbff1b_1
lzo 2.10 he774522_2
magicgui 0.5.1 pypi_0 pypi
markdown 3.4.1 pypi_0 pypi
markupsafe 2.1.1 pypi_0 pypi
matplotlib 3.6.0 pypi_0 pypi
matplotlib-inline 0.1.6 pypi_0 pypi
mkl 2021.4.0 haa95532_640
mkl-service 2.4.0 py39h2bbff1b_0
mkl_fft 1.3.1 py39h277e83a_0
mkl_random 1.2.2 py39hf11a4ad_0
mock 4.0.3 pyhd3eb1b0_0
msgpack 1.0.4 pypi_0 pypi
msgpack-numpy 0.4.8 pypi_0 pypi
napari 0.4.16 pypi_0 pypi
napari-console 0.0.6 pypi_0 pypi
napari-deeplabcut 0.0.6 pypi_0 pypi
napari-plugin-engine 0.2.0 pypi_0 pypi
napari-svg 0.1.6 pypi_0 pypi
nest-asyncio 1.5.6 pypi_0 pypi
networkx 2.8.7 pypi_0 pypi
npe2 0.6.1 pypi_0 pypi
numba 0.56.2 pypi_0 pypi
numexpr 2.8.3 py39hb80d3ca_0
numpy 1.23.3 pypi_0 pypi
numpy-base 1.23.1 py39hca35cd5_0
numpydoc 1.4.0 pypi_0 pypi
oauthlib 3.2.1 pypi_0 pypi
opencv-python 4.6.0.66 pypi_0 pypi
opencv-python-headless 4.6.0.66 pypi_0 pypi
openssl 1.1.1q h2bbff1b_0
opt-einsum 3.3.0 pypi_0 pypi
packaging 21.3 pyhd3eb1b0_0
pandas 1.5.0 pypi_0 pypi
parso 0.8.3 pypi_0 pypi
partd 1.3.0 pypi_0 pypi
patsy 0.5.2 pypi_0 pypi
pep517 0.13.0 pypi_0 pypi
pickleshare 0.7.5 pypi_0 pypi
pillow 9.2.0 pypi_0 pypi
pims 0.6.1 pypi_0 pypi
pint 0.19.2 pypi_0 pypi
pip 22.2.2 py39haa95532_0
prompt-toolkit 3.0.31 pypi_0 pypi
protobuf 3.19.6 pypi_0 pypi
psutil 5.9.2 pypi_0 pypi
psygnal 0.4.2 pypi_0 pypi
pure-eval 0.2.2 pypi_0 pypi
pyasn1 0.4.8 pypi_0 pypi
pyasn1-modules 0.2.8 pypi_0 pypi
pydantic 1.10.2 pypi_0 pypi
pygments 2.13.0 pypi_0 pypi
pyopengl 3.1.6 pypi_0 pypi
pyparsing 3.0.9 py39haa95532_0
pyrsistent 0.18.1 pypi_0 pypi
pyside2 5.15.2.1 pypi_0 pypi
pytables 3.7.0 py39h9d4cd68_0
python 3.9.13 h6244533_1
python-dateutil 2.8.2 pypi_0 pypi
pytomlpp 1.0.11 pypi_0 pypi
pytz 2022.4 pypi_0 pypi
pywavelets 1.4.1 pypi_0 pypi
pywin32 304 pypi_0 pypi
pyyaml 6.0 pypi_0 pypi
pyzmq 24.0.1 pypi_0 pypi
qdarkstyle 3.1 pypi_0 pypi
qtconsole 5.3.2 pypi_0 pypi
qtpy 2.2.1 pypi_0 pypi
requests 2.28.1 pypi_0 pypi
requests-oauthlib 1.3.1 pypi_0 pypi
rich 12.6.0 pypi_0 pypi
rsa 4.9 pypi_0 pypi
ruamel-yaml 0.17.21 pypi_0 pypi
ruamel-yaml-clib 0.2.6 pypi_0 pypi
scikit-image 0.19.3 pypi_0 pypi
scikit-learn 1.1.2 pypi_0 pypi
scipy 1.9.1 pypi_0 pypi
setuptools 59.8.0 pypi_0 pypi
shapely 1.8.4 pypi_0 pypi
shiboken2 5.15.2.1 pypi_0 pypi
six 1.16.0 pyhd3eb1b0_1
slicerator 1.1.0 pypi_0 pypi
snowballstemmer 2.2.0 pypi_0 pypi
sphinx 5.2.3 pypi_0 pypi
sphinxcontrib-applehelp 1.0.2 pypi_0 pypi
sphinxcontrib-devhelp 1.0.2 pypi_0 pypi
sphinxcontrib-htmlhelp 2.0.0 pypi_0 pypi
sphinxcontrib-jsmath 1.0.1 pypi_0 pypi
sphinxcontrib-qthelp 1.0.3 pypi_0 pypi
sphinxcontrib-serializinghtml 1.1.5 pypi_0 pypi
sqlite 3.39.3 h2bbff1b_0
stack-data 0.5.1 pypi_0 pypi
statsmodels 0.13.2 pypi_0 pypi
superqt 0.3.5 pypi_0 pypi
tables 3.7.0 pypi_0 pypi
tabulate 0.8.10 pypi_0 pypi
tensorboard 2.10.1 pypi_0 pypi
tensorboard-data-server 0.6.1 pypi_0 pypi
tensorboard-plugin-wit 1.8.1 pypi_0 pypi
tensorflow 2.10.0 pypi_0 pypi
tensorflow-estimator 2.10.0 pypi_0 pypi
tensorflow-io-gcs-filesystem 0.27.0 pypi_0 pypi
tensorpack 0.11 pypi_0 pypi
termcolor 2.0.1 pypi_0 pypi
tf-slim 1.1.0 pypi_0 pypi
threadpoolctl 3.1.0 pypi_0 pypi
tifffile 2022.8.12 pypi_0 pypi
tomli 2.0.1 pypi_0 pypi
toolz 0.12.0 pypi_0 pypi
torch 1.12.1 pypi_0 pypi
tornado 6.2 pypi_0 pypi
tqdm 4.64.1 pypi_0 pypi
traitlets 5.4.0 pypi_0 pypi
typer 0.6.1 pypi_0 pypi
typing-extensions 4.3.0 pypi_0 pypi
tzdata 2022c h04d1e81_0
urllib3 1.26.12 pypi_0 pypi
vc 14.2 h21ff451_1
vispy 0.10.0 pypi_0 pypi
vs2015_runtime 14.27.29016 h5e58377_2
wcwidth 0.2.5 pypi_0 pypi
werkzeug 2.2.2 pypi_0 pypi
wheel 0.37.1 pyhd3eb1b0_0
wincertstore 0.2 py39haa95532_2
wrapt 1.14.1 pypi_0 pypi
zipp 3.8.1 pypi_0 pypi
zlib 1.2.12 h8cc25b3_3
zstd 1.5.2 h19a0ad4_0
Unfortunately, I don't have the time right now to try fiddling with the build, but if anyone has some suggestions I'd be happy to try.
Hey @backyardbiomech thanks again so much! I added imageio-ffmpeg to setup now, to be doubly sure, and also the force-install; I have no issues opening the demo data with the gui, etc, so maybe try an install again now to see if fine?
EDITS TO DO:
@jeylau minor comment, but the "check labels" button is gone from label tab; let's add that back as it's an optional step in user guide (although I agree now just flipping rapidly through images in napari GUI is much better/faster)
I also don't like that now one HAS to save before you can quit the labeling aspect; sometimes one makes a mistake and it's easier to just close and re-start, but now it forces me to save. I would like the warning once, but then allow me to close the napari-labeling GUI.
Failing to install on Ubuntu 20.04
qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in "/home/userdlc/anaconda3/envs/DEEPLABCUT_newGUI/lib/python3.9/site-packages/cv2/qt/plugins" even though it was found. This application failed to start because no Qt platform plugin could be initialized. Reinstalling the application may fix this problem.
Failing to install on Ubuntu 20.04
qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in "/home/userdlc/anaconda3/envs/DEEPLABCUT_newGUI/lib/python3.9/site-packages/cv2/qt/plugins" even though it was found. This application failed to start because no Qt platform plugin could be initialized. Reinstalling the application may fix this problem.
Same behavior on separate computer (hardware) with Ubuntu 22.04
I suspect it may have to do with open-cv-python and open-cv-python-headless both being installed, but I can't seem to figure out a configuration that works.