torchdrug icon indicating copy to clipboard operation
torchdrug copied to clipboard

Published 20 hours ago • verified publisher icon DeepGraphLearning

Downloading AlphaFoldDB

Open violet-sto opened this issue 1 year ago • 3 comments

Hello,

After I manually downloaded the data, I found that md5 is inconsistent with that provided by the code. So the code will re-download the data again. What should I do?

Furthermore, I ran into metaclass conflicts when imported ogb after importing torchdrug.

violet-sto avatar Apr 02 '23 17:04 violet-sto

Hi, it's probably because AlphaFoldDB has updated the latest version while we haven't updated it yet. Could you provide some detailed logs for your problem so that we can debug it?

Oxer11 avatar Apr 03 '23 19:04 Oxer11

My torchdrug version is 0.2.0.post1, and I found that it always downloads AlphaFoldDB v2. Take METJA_v2 as an example, the provided md5s is 'e5b12da43f5bd77298ca50e19706bdeb', however, the md5s of the data downloaded manually is 'da938dfae4fabf6e144f4b5ede5885ec'.

Here are the logs for metaclass conflicts. image

violet-sto avatar Apr 04 '23 08:04 violet-sto

We've updated AlphaFoldDB in v0.2.1. It should be good now.

KiddoZhu avatar Jul 18 '23 16:07 KiddoZhu