svimmer
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DecodeGenetics
Structural variant merging tool
Dear author, Some of my vcf files can only generate csi index and cannot generate tbi index due to the length of chromosome, so I would like to ask if...
Hi, I am trying to merge a list of VCFs of SVs using svimmer, but receive the following error: `Traceback (most recent call last): File "../../../svimmer/svimmer", line 140, in header...
Dear developers. When I use svimmer to merge the vcf created by manta. I found some warnings in the log file. ``` [W::tbx_parse1] Coordinate
Dear @hannespetur Thank you and colleagues for the very nice svimmer and graphtyper software. I would like to use svimmer and graphtyper for forced genotyping of the UNION of Manta...
@hannespetur with this little change one doesn't remove (intrachromosomal) INV calls from Manta (raw from v1.4.0 or [processed](https://github.com/Illumina/manta/blob/27ba65e788572abb2b3d8afcb6aea1f5e8e98ae6/src/python/libexec/convertInversion.py) from > v1.5.0) during merging.
