popSTR

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Hi, does this tool (pipeline) work for other species, e.g Drosophila? It seems markerInfo files are only for humans? Thanks!

Yiguan

Are default kernels available for the rest of the markers?

2

Hi, I am not able to get the first Iteration 0 to run for computePnSlippageDefault. I am able to run the default kernel for 8779 markers on chr21, to completion,...

Emma-M-Rath

Hi, When I run iteration 0 for computePnSlippageDefault for markers that I know should give a result (because when I use the default chr21 kernel I am able to get...

Emma-M-Rath

Hi, setting of the reference allele in the vcf fails (informatively, thank you for that) in almost all environments. The issue is at https://github.com/DecodeGenetics/popSTR/blob/3a5ca742116bee78490e8bbb6e2c47ffc7781334/msGenotyper.cpp#L549 A simple fix would be to...

kpalin

"Couldn't make ofstream for marker @" error

3

Hi, I want to use popSTR. But I got the below error. ``` Couldn't make ofstream for marker @ ./attributes/chr11/130017329_CACAGT ERROR: Could not read index file for test.bam ``` I...

SIJAE-WOO