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how to gain the sequence information

Open zhoudreames opened this issue 1 year ago • 0 comments

I get the vcf files with graphtyper, but the column of REF and ALT doesn't contain sequence information. For example: image but I want to gain such format, the REF and ALT shown as G and GAAAAGTAAACTTGGGAGTTCCCAT...., how to gain such format ? thanks~

#CHROM  POS     ID      REF     ALT     QUAL    FILTER  INFO    FORMAT
chr2    8005860 chr2:8005860:DG G GAAAAGTAAACTTGGGAGTTCCCATT.....

zhoudreames avatar Jul 22 '22 14:07 zhoudreames