graphtyper
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how to gain the sequence information
I get the vcf files with graphtyper, but the column of REF and ALT doesn't contain sequence information. For example:
but I want to gain such format, the REF and ALT shown as G and GAAAAGTAAACTTGGGAGTTCCCAT...., how to gain such
format ? thanks~
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT
chr2 8005860 chr2:8005860:DG G GAAAAGTAAACTTGGGAGTTCCCATT.....