What does that mean？（FT=FAIL1/FAIL2/FAIL3！）

[yinmou21]

Hi，

Thank you so much for developing such a nice program.

The output of GraphTyper2 contains something: FT=FAIL1 or FAIL2 or FAIL3！

What does that mean, please?

Thank you very much for your answer!

[hannespetur]

Hi. It is different failure levels, higher lever means less confident call. Basically it looks at what the other genotype models are calling and gives FT=PASS if all the models are in high agreement, FAIL1 means there is some slight disagreement, and so on.