Timothy J. Rogers

error when running test.fa

3

Hello, I am receiving a similar error to others after installing VS2, but there doesnt seem to be a fix. I have installed both the developmental version and the conda...

Error when running test

3

Not sure what I've done wrong, but every time I try to run the test data, I get this same fault. I have uninstalled and reinstalled both virsorter2 and the...

Citation

4

Hello developer, I was wondering how to cite VirSorter2. Is it the same citation as VirSorter?

multiple check_xml_errors when using entrez_link of protien IDs of Metagenomic assembled genomes from NCBI

2

When I run the following I get the results I am looking for: entrez_link(db="taxonomy", dbfrom="protein", id=c("QNO56202.1","RCV65969.1","OYV13592.1", "WP_138323301.1","WP_007546357.1","KPJ68349.1", "RLB10506.1"), by_id=TRUE) However, if I run any protein id of a MAG thats...

Question about TPM

2

Hello developers, Let me start by saying thanks for this awesome tool. Its been a lifesaver for me. But I do have a long winded question about how it calculates...

I saw that you can use "kaiju-mergeOutputs" to merge the output of kaiju and kraken. As in your example: (kaiju-mergeOutputs -i kaiju.out.sort -j kraken.out.sort -o combined.out -v). I was wondering...