sem-prov-ontologies icon indicating copy to clipboard operation
sem-prov-ontologies copied to clipboard
verified publisher icon DataONEorg

Clean up URIs used in salmon ontology

Open amoeba opened this issue 4 years ago • 1 comments

We noticed some of the terms in the salmon ontology don't consistently pad their OBO-style URIs to 8 digits (e.g., 001234 when they should be 00001234). Mark is going to do this cleanup but I'll manage this issue with progress.

amoeba avatar Nov 19 '21 02:11 amoeba

A list of all the URIs we've already used is over at https://github.com/DataONEorg/sem-prov-ontologies/issues/120#issuecomment-973684643.

amoeba avatar Nov 19 '21 03:11 amoeba

All of the 5 and 6 digit URIs were converted to 8 digit, and the SALMON_alignment.ttl file was created to map between them. Also, the redirects were restructured to automatically redirect 5 and 6 digit identifiers to their 8 digit counterparts. So, completed in salmon-0.3.2

mbjones avatar Aug 03 '24 00:08 mbjones