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Add colored logging
This will close #4827
Changelog Entry
To be copied to the draft changelog by merger:
- Add colored logging to Toil
- Added a new option
--no-color
to disable colored logging
- Added a new option
Reviewer Checklist
- [ ] Make sure it is coming from
issues/XXXX-fix-the-thing
in the Toil repo, or from an external repo.- [ ] If it is coming from an external repo, make sure to pull it in for CI with:
contrib/admin/test-pr otheruser theirbranchname issues/XXXX-fix-the-thing
- [ ] If there is no associated issue, create one.
- [ ] If it is coming from an external repo, make sure to pull it in for CI with:
- [ ] Read through the code changes. Make sure that it doesn't have:
- [ ] Addition of trailing whitespace.
- [ ] New variable or member names in
camelCase
that want to be insnake_case
. - [ ] New functions without type hints.
- [ ] New functions or classes without informative docstrings.
- [ ] Changes to semantics not reflected in the relevant docstrings.
- [ ] New or changed command line options for Toil workflows that are not reflected in
docs/running/{cliOptions,cwl,wdl}.rst
- [ ] New features without tests.
- [ ] Comment on the lines of code where problems exist with a review comment. You can shift-click the line numbers in the diff to select multiple lines.
- [ ] Finish the review with an overall description of your opinion.
Merger Checklist
- [ ] Make sure the PR passes tests.
- [ ] Make sure the PR has been reviewed since its last modification. If not, review it.
- [ ] Merge with the Github "Squash and merge" feature.
- [ ] If there are multiple authors' commits, add Co-authored-by to give credit to all contributing authors.
- [ ] Copy its recommended changelog entry to the Draft Changelog.
- [ ] Append the issue number in parentheses to the changelog entry.