Implement wall clock time resource requests in Toil and expose to CWL and WDL jobs

[ielis]

Dear developers, I am using Toil for running a pipeline in a HPC environment that uses Slurm for job scheduling.

Certain jobs of my pipeline are shorter than the others and it would be help me a lot if there was an option for specifying walltime for the job. I was not able to find this in the docs. Is there a way how to tell the scheduler how long a job is supposed to be running? Any other way than using $TOIL_SLURM_ARGS?

Thanks, Daniel

┆Issue is synchronized with this Jira Story ┆Issue Number: TOIL-539