How much memory consumed per core?

[Pentayouth]

Dear developer, I ran BayesPrism using ref [16000gene*50000cell] on blk [16000gene*400sample] using 16 cores on desktop with 128GB RAM but halted. I wonder how much memory consumed per core in a typical run?

Best regards, Pty

[tinyi]

Dear user,

Thank you for your interest in BayesPrism.

The short answer is that the entire scRNA-seq reference (gene-by-cell state matrix) and a single bulk data is sent to an individual node (when performing gibbs sampling). You may extract the gene-by-cell state matrix from the prism object, and then check the size of the object. You may also use the top command (in linux) to monitor the memory usage.

Best,

Tinyi

On Tue, May 7, 2024 at 2:28 AM Pentayouth @.***> wrote:

Dear developer, I ran BayesPrism using ref [16000gene50000cell*] on blk [ 16000gene400sample*] using 16 cores on desktop with 128GB RAM but halted. I wonder how much memory consumed per core in a typical run?

Best regards, Pty

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