Do we need to merge our expression file (RNA-seq) and our reference file (scRNA-seq) as our input file?

[misha832]

Hi,

It's my first time I'm going to use bayesprism and I have an issue to create my input file. I'm wondering if I need to merge my query file and my reference file and read them in R all together? If you can put an example of input file which will be load in R, that would be great and super useful. I couldn't find anything like this and it's a little bit confusing, especially for those who are not familiar with this package.

Thanks for all your effort and help.

[tinyi]

Thank you for your interest in our methods. Please refer to the vignette and use the rdata from tutorial.dat as an example. Thanks.

On Thu, Dec 14, 2023 at 11:34 PM misha832 @.***> wrote:

Hi,

It's my first time I'm going to use bayesprism and I have an issue to create my input file. I'm wondering if I need to merge my query file and my reference file and read them in R all together? If you can put an example of input file which will be load in R, that would be great and super useful. I couldn't find anything like this and it's a little bit confusing, especially for those who are not familiar with this package.

Thanks for all your effort and help.

— Reply to this email directly, view it on GitHub https://github.com/Danko-Lab/BayesPrism/issues/70, or unsubscribe https://github.com/notifications/unsubscribe-auth/AB4NHSZ5CRIPFQOEIGPJQBDYJMMB3AVCNFSM6AAAAABAVBLZ2CVHI2DSMVQWIX3LMV43ASLTON2WKOZSGA2DCOJUHE4DEMY . You are receiving this because you are subscribed to this thread.Message ID: @.***>