proper use of get.exp() function

[alexdray86]

Dear Sir or Madam,

I am having trouble to get the matrix of cell-type expression from bayesprism output. I am trying to use :

get.exp(bp.res, state.or.type="type")

But the latter unfortunately only give me back a flat vector and despite my effort to build a 3d array with it, I cannot find the right dimension order. How to get the 3d array we are supposed to get from this (e.g. high-resolution cell-type expression)

Thanks in advance ! Regards,

Alexandre Coudray PhD student in Trono/La Manno group, EPFL Switzerland

[tinyi]

Hi Alexandre,

Thank you for your interest in our method. Could you do print(bp.res) and head(get.exp(bp.res, state.or.type="type")), and post the results for troubleshooting? Many thanks.

Best,

Tinyi

On Thu, Feb 9, 2023 at 11:27 AM Alexandre Coudray - LVG lab EPFL < @.***> wrote:

Dear Sir or Madam,

I am having trouble to get the matrix of cell-type expression from bayesprism output. I am trying to use :

get.exp(bp.res, state.or.type="type")

But the latter unfortunately only give me back a flat vector and despite my effort to build a 3d array with it, I cannot find the right dimension order. How to get the 3d array we are supposed to get from this (e.g. high-resolution cell-type expression)

Thanks in advance ! Regards,

Alexandre Coudray PhD student in Trono/La Manno group, EPFL Switzerland

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