Can BayesPrism use for no-tumor tissue RNA-seq?

[weishaoxia]

I want to deconvolute non-tumor tissue, my cell.type.labels is same with cell.type.labels, and the "key" of new.prism is set to NULL, is it correct？

[tinyi]

Yes.

On Fri, Sep 16, 2022 at 3:10 AM weishaoxia @.***> wrote:

I want to deconvolute non-tumor tissue, my cell.type.labels is same with cell.type.labels, and the "key" of new.prism is set to NULL, is it correct？

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[tinyi]

Hi. Sorry for the delay. Could you please include the exact function call and the error reported? Thanks.

On Wed, Nov 8, 2023 at 2:07 AM faenee @.***> wrote:

Hello, I wonder if you have successfully deconvolute non-tumor tissue. Because I met an error when the "key" of new.prism is set to NULL. [image: 1699427202827] https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fuser-images.githubusercontent.com%2F150225866%2F281294189-91fc7557-13f7-4812-87e1-3c3aa0e6243d.png&data=05%7C01%7Ctc532%40g.cornell.edu%7C6eb9f25da3854f1592e408dbe02953b5%7C5d7e43661b9b45cf8e79b14b27df46e1%7C0%7C0%7C638350240332803325%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=2xHqfoX6xfCJZHgQMazZaq22ZBU8kSQiPQ5Cnb8J5vE%3D&reserved=0

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