UMICollapse
UMICollapse copied to clipboard
Daniel-Liu-c0deb0t
Any chance of making a Conda package?
Any chance of packaging this up for Bioconda? would make containerising + Nextflow stuff so much easier!!
Program is working so great I want it in my pipelines!
Another thing!! In this same vein it would great if you could add a version argument to the tool so we can version control our pipelines using the tool.
Hi - I've gone ahead and make a conda package for UMICollapse >> https://anaconda.org/bioconda/umicollapse
users can now install using the command conda install -c bioconda umicollapse. You might want to add this to your documentation. The versioning is pinned to my fork of the repo. Once this propogates to biocontainers, I can also submit the nf-core module to make it easy to use for Nextflow programmers.
Ah thank you so much! (I have not published packages to bioconda before.)
just realised there's an issue with the dependencies :// - will try to fix now!!
its fixed now, should be working https://anaconda.org/bioconda/umicollapse
Hi -- just a nudge, it would be worth adding this as an installation instruction in your readme as it will make things easier for a lot of people. Can be installed to a conda environment with conda install -c bioconda umicollapse
the nf-core module is also available and tested >> https://nf-co.re/modules/umicollapse
Sorry for the delay. I've added the conda instructions and the nf-core link to the readme. Thanks for doing this!