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Published 20 hours ago • verified publisher icon Daniel-Liu-c0deb0t

parallelization ?

Open karlkashofer opened this issue 2 years ago • 1 comments

Hi ! I am looking for ways to parallelize umicollapse. What does -t: parallelize the deduplication of each separate alignment position. Using this is discouraged as it is lacking many features. mean ? What features are missing ? thanks, KK

karlkashofer avatar May 15 '22 00:05 karlkashofer

If I recall correctly, parallelization with -t only works with single-end reads and with the sam/bam modes.

Also I don't think I observed a large performance increase from parallelism.

Daniel-Liu-c0deb0t avatar May 16 '22 07:05 Daniel-Liu-c0deb0t