DanSchnell

Thanks much Jonathan for your quick reply. I will try with a different environment/machine. From: Jonathan Bac ***@***.***> Reply-To: scikit-learn-contrib/scikit-dimension ***@***.***> Date: Tuesday, June 28, 2022 at 6:07 PM To:...

Related to this post about exporting results, is there a way to access the estimated standard errors of the doublet scores without going in and modifying the scrub_doublets() function?

Thanks very much Sam! Dan From: Sam Wolock Reply-To: swolock/scrublet Date: Tuesday, May 21, 2019 at 4:37 PM To: swolock/scrublet Cc: "Schnell, Daniel (Dan)" , Author Subject: Re: [swolock/scrublet] SVD...

Hi Onur, Thanks for the information that you provided about the upstream steps and the error message. I'm assuming that you are running DoubletDecon in-line with R, not the GUI--but...

Hi Onur, I'm not sure if this is related to the error message that you got on the 6th sample, but I'm wondering if the call of the top_n function...

Hi Onur, The error is coming up in the step that is combining clusters for the purpose of creating synthetic doublets. A possible cause is that the binarized correlation matrix...

Hi Onur, I only see markers for clusters 0, 1 and 2--maybe the file was truncated due to size. There appears to be > 50 for each of the first...

Attached is an example of the heatmap that I'm talking about. [Blacklist_11clusters.pdf](https://github.com/EDePasquale/DoubletDecon/files/3493679/Blacklist_11clusters.pdf)

Hi Onur, For some reason the heatmaps that you attached do not seem to be accessible. Could you please attach them to another reply? Otherwise, you can send them directly...