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error during installation windows 11

Open primimazza opened this issue 1 year ago • 7 comments

  AttributeError: 'dict' object has no attribute '__NUMPY_SETUP__'
  [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. error: metadata-generation-failed

× Encountered error while generating package metadata. ╰─> See above for output.

note: This is an issue with the package mentioned above, not pip. hint: See above for details.

primimazza avatar Jun 29 '23 13:06 primimazza

Can you provide more about the error log?

ChandlerBang avatar Jun 29 '23 13:06 ChandlerBang

C:\Users\Administrator>pip install deeprobust Requirement already satisfied: deeprobust in c:\users\administrator\appdata\local\programs\python\python310\lib\site-packages\deeprobust-0.2.7-py3.10.egg (0.2.7) Collecting matplotlib>=3.1.1 (from deeprobust) Using cached matplotlib-3.7.1-cp310-cp310-win_amd64.whl (7.6 MB) Requirement already satisfied: numpy>=1.17.1 in c:\users\administrator\appdata\local\programs\python\python310\lib\site-packages (from deeprobust) (1.23.4) Requirement already satisfied: torch>=1.2.0 in c:\users\administrator\appdata\local\programs\python\python310\lib\site-packages (from deeprobust) (2.0.1) Requirement already satisfied: scipy>=1.3.1 in c:\users\administrator\appdata\local\programs\python\python310\lib\site-packages (from deeprobust) (1.11.0) Collecting torchvision>=0.4.0 (from deeprobust) Using cached torchvision-0.15.2-cp310-cp310-win_amd64.whl (1.2 MB) Collecting texttable>=1.6.2 (from deeprobust) Using cached texttable-1.6.7-py2.py3-none-any.whl (10 kB) Requirement already satisfied: networkx>=2.4 in c:\users\administrator\appdata\local\programs\python\python310\lib\site-packages (from deeprobust) (3.1) Collecting numba>=0.48.0 (from deeprobust) Using cached numba-0.57.1-cp310-cp310-win_amd64.whl (2.5 MB) Collecting Pillow>=7.0.0 (from deeprobust) Using cached Pillow-9.5.0-cp310-cp310-win_amd64.whl (2.5 MB) Requirement already satisfied: scikit_learn>=0.22.1 in c:\users\administrator\appdata\local\programs\python\python310\lib\site-packages (from deeprobust) (1.2.2) Collecting scikit-image>=0.0 (from deeprobust) Using cached scikit_image-0.21.0-cp310-cp310-win_amd64.whl (22.8 MB) Collecting tensorboardX>=2.0 (from deeprobust) Using cached tensorboardX-2.6.1-py2.py3-none-any.whl (101 kB) Requirement already satisfied: tqdm>=3.0 in c:\users\administrator\appdata\local\programs\python\python310\lib\site-packages (from deeprobust) (4.65.0) Collecting gensim<4.0,>=3.8 (from deeprobust) Using cached gensim-3.8.3.tar.gz (23.4 MB) Installing build dependencies ... done Getting requirements to build wheel ... done Installing backend dependencies ... done Preparing metadata (pyproject.toml) ... error error: subprocess-exited-with-error

× Preparing metadata (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [55 lines of output] running dist_info creating C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-xw8vksgb\gensim.egg-info writing C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-xw8vksgb\gensim.egg-info\PKG-INFO writing dependency_links to C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-xw8vksgb\gensim.egg-info\dependency_links.txt writing requirements to C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-xw8vksgb\gensim.egg-info\requires.txt writing top-level names to C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-xw8vksgb\gensim.egg-info\top_level.txt writing manifest file 'C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-xw8vksgb\gensim.egg-info\SOURCES.txt' Traceback (most recent call last): File "C:\Users\Administrator\AppData\Local\Programs\Python\Python310\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 353, in main() File "C:\Users\Administrator\AppData\Local\Programs\Python\Python310\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 335, in main json_out['return_val'] = hook(**hook_input['kwargs']) File "C:\Users\Administrator\AppData\Local\Programs\Python\Python310\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 149, in prepare_metadata_for_build_wheel return hook(metadata_directory, config_settings) File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\build_meta.py", line 487, in run_setup super(BuildMetaLegacyBackend, File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51\overlay\Lib\site-packages\setuptools\build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 367, in File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools_init_.py", line 107, in setup return distutils.core.setup(**attrs) File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools_distutils\core.py", line 185, in setup return run_commands(dist) File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools_distutils\core.py", line 201, in run_commands dist.run_commands() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools_distutils\dist.py", line 969, in run_commands self.run_command(cmd) File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\dist.py", line 1234, in run_command super().run_command(command) File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools_distutils\dist.py", line 988, in run_command cmd_obj.run() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\command\dist_info.py", line 99, in run self.egg_info.run() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 314, in run self.find_sources() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 322, in find_sources mm.run() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 551, in run self.add_defaults() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 589, in add_defaults sdist.add_defaults(self) File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools\command\sdist.py", line 104, in add_defaults super().add_defaults() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools_distutils\command\sdist.py", line 251, in add_defaults self.add_defaults_ext() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51\overlay\Lib\site-packages\setuptools_distutils\command\sdist.py", line 335, in add_defaults_ext build_ext = self.get_finalized_command('build_ext') File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51\overlay\Lib\site-packages\setuptools_distutils\cmd.py", line 305, in get_finalized_command cmd_obj.ensure_finalized() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-mo48a51_\overlay\Lib\site-packages\setuptools_distutils\cmd.py", line 111, in ensure_finalized self.finalize_options() File "", line 111, in finalize_options AttributeError: 'dict' object has no attribute 'NUMPY_SETUP' [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. error: metadata-generation-failed

× Encountered error while generating package metadata. ╰─> See above for output.

note: This is an issue with the package mentioned above, not pip. hint: See above for details.

primimazza avatar Jun 29 '23 13:06 primimazza

It seems that you are having a problem installing the gensim pacalakge.

One solution is to install gensim yourself on windows.

Then you need to modify the setup.py file by removing the 'gensim':

https://github.com/DSE-MSU/DeepRobust/blob/122588ed0eb5599206544d091c663ed89a3bbdb0/setup.py#L18-L33

First clone this repository, then modifysetup.py, and run python setup.py install.

ChandlerBang avatar Jun 30 '23 01:06 ChandlerBang

I tried to perform some solutions but the error persists C:\Users\Administrator>pip install gensim==3.8.3 Collecting gensim==3.8.3 Using cached gensim-3.8.3.tar.gz (23.4 MB) Installing build dependencies ... done Getting requirements to build wheel ... done Installing backend dependencies ... done Preparing metadata (pyproject.toml) ... error error: subprocess-exited-with-error

× Preparing metadata (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [55 lines of output] running dist_info creating C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-2ya76pcn\gensim.egg-info writing C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-2ya76pcn\gensim.egg-info\PKG-INFO writing dependency_links to C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-2ya76pcn\gensim.egg-info\dependency_links.txt writing requirements to C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-2ya76pcn\gensim.egg-info\requires.txt writing top-level names to C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-2ya76pcn\gensim.egg-info\top_level.txt writing manifest file 'C:\Users\Administrator\AppData\Local\Temp\pip-modern-metadata-2ya76pcn\gensim.egg-info\SOURCES.txt' Traceback (most recent call last): File "C:\Users\Administrator\AppData\Local\Programs\Python\Python310\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 353, in main() File "C:\Users\Administrator\AppData\Local\Programs\Python\Python310\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 335, in main json_out['return_val'] = hook(**hook_input['kwargs']) File "C:\Users\Administrator\AppData\Local\Programs\Python\Python310\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 149, in prepare_metadata_for_build_wheel return hook(metadata_directory, config_settings) File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\build_meta.py", line 487, in run_setup super(BuildMetaLegacyBackend, File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 367, in File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_init.py", line 107, in setup return distutils.core.setup(**attrs) File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_distutils\core.py", line 185, in setup return run_commands(dist) File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_distutils\core.py", line 201, in run_commands dist.run_commands() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_distutils\dist.py", line 969, in run_commands self.run_command(cmd) File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\dist.py", line 1234, in run_command super().run_command(command) File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_distutils\dist.py", line 988, in run_command cmd_obj.run() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\command\dist_info.py", line 99, in run self.egg_info.run() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 314, in run self.find_sources() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 322, in find_sources mm.run() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 551, in run self.add_defaults() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 589, in add_defaults sdist.add_defaults(self) File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools\command\sdist.py", line 104, in add_defaults super().add_defaults() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_distutils\command\sdist.py", line 251, in add_defaults self._add_defaults_ext() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_distutils\command\sdist.py", line 335, in _add_defaults_ext build_ext = self.get_finalized_command('build_ext') File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_distutils\cmd.py", line 305, in get_finalized_command cmd_obj.ensure_finalized() File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-vd0vpltf\overlay\Lib\site-packages\setuptools_distutils\cmd.py", line 111, in ensure_finalized self.finalize_options() File "", line 111, in finalize_options AttributeError: 'dict' object has no attribute 'NUMPY_SETUP' [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. error: metadata-generation-failed

× Encountered error while generating package metadata. ╰─> See above for output.

note: This is an issue with the package mentioned above, not pip. hint: See above for details.

primimazza avatar Jun 30 '23 11:06 primimazza

You may debug on how to install gensim in windows. Here is some answer from ChatGPT.

If the issue is hard to resolve, you can remove the file deeprobust/graph/defense/node_embedding.py which uses the gensim package and install the deeprobust package by "python setup.py install".

ChandlerBang avatar Jun 30 '23 14:06 ChandlerBang

@ChandlerBang Would you consider updating the version of gensim that is used in DeepRobust? This issue was fixed in gensim 4.3.0 (see https://github.com/RaRe-Technologies/gensim/releases/tag/4.3.0, with relevant issues https://github.com/RaRe-Technologies/gensim/issues/3225, https://github.com/RaRe-Technologies/gensim/issues/3362 and fix https://github.com/RaRe-Technologies/gensim/pull/3363).

They have also said that they will not fix it in the latest version of gensim that DeepRobust currently can use (3.8.3) since they are not supporting it anymore (https://github.com/RaRe-Technologies/gensim/pull/3386).

Since gensim is only used in one file in DeepRobust (https://github.com/DSE-MSU/DeepRobust/blob/d25d95b33724af9ab0385d5171c989f9b4ff2359/deeprobust/graph/defense/node_embedding.py) and the gensim API has only changed a little bit in the new version (https://github.com/RaRe-Technologies/gensim/wiki/Migrating-from-Gensim-3.x-to-4) I think it is very straightforward to achieve this. I'd be happy to prepare a PR for this if desired.

This fix would make it much easier to reliably share packages that depend on DeepRobust.

fsherry avatar Aug 10 '23 21:08 fsherry

@fsherry Thanks so much for the suggestion, and I have updated the package dependencies!

I sincerely apologize for the late response as I missed this thread before.

ChandlerBang avatar Jul 23 '24 13:07 ChandlerBang