DCossey

Still getting issue with rsync

7

Hi everyone, I am still getting the issue below when trying to build the bacteria kraken database from NCBI. rsync_from_ncbi.pl: unexpected FTP path (new server?) for https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/128/725/GCF_900128725.1_BCifornacula_v1.0 I saw many...

Cuda out of memory

3

Hi everyone, We are trying to basecall and dorado is crashing/aborting. Apparently because CUDA is out of memory Here is what we got: [2023-12-19 10:53:12.363] [info] > No duplex pairs...

Metadata editing in pod5 files

10

Hi, we were running into an error during dorado basecalling (of recovered files after a failed run) due to incorrect sequencing kit: [2023-12-15 14:35:04.358] [error] Unknown sequencing_kit: FLO-PRO114M So then...