scopen

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fitting error

2

Hi Thank you for the great software. I'm trying to create the imputed matrix. I run scopen, but it failed due to fitting error when the n_components are 10 or...

yamajackr

Can I run scopen with TF-IDF matrix?

1

Hello, Thanks for this great software. Could I run scOpen with TF-IDF as inputs. For more specific, my ATAC-seq peak counts have been transformed with [TF-IDF](https://muon.readthedocs.io/en/latest/api/generated/muon.atac.pp.tfidf.html?highlight=tfidf) using the default log(TF)...

bitcometz

Working with large matrixes

1

Hello, Great software! I am running into a bit of trouble working with the resulting imputed matrix. Specifically, my output matrix is ~100 Gb in size, which is somewhat expected,...

1010shane

ValueError: Negative values in data passed to NMF

1

Hi, I tried the command `scopen` on my count data (all integers and non-negative), but it threw an error that there exist negative values for NMF input. Then I checked...

Dominic7227

Hi, This is a wonderful work. Could you please provide the evaluation code to reproduce the results? Thank you very much.

EddieBio

installation did not work

3

Hi, I tried to install the package but it stopped. Any ideas what the problem is? `pip install scopen Defaulting to user installation because normal site-packages is not writeable Collecting...

fahmadimoughari