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compute_neural_rdms missing

Open Inf-YifanYang opened this issue 2 years ago • 3 comments

Hi,

Can you provide the code for "compute_neural_rdms"? There is a problem in

from compute_neural_rdms import *

for running get_srp_ridge_scores.py.

Thanks a lot!

Inf-YifanYang avatar May 11 '22 20:05 Inf-YifanYang

This appears to be a legacy import that was never removed. It should be fixed now, but let me know if you have any other trouble.

ColinConwell avatar May 11 '22 21:05 ColinConwell

Thanks for the reply!

How were neural rdms computed? Can you provide the code for the computation of these quantities, for example, cell_response_average.csv.

Thanks!

Inf-YifanYang avatar May 12 '22 16:05 Inf-YifanYang

@Inf-YifanYang The neural rdms were computed from the cell_response_average.csv file. The cell_response_average.csv comes from custom code that parses the data from the AllenBrainObservatory. I can post that code to the repo if it seems useful? But I imagine it will be contingent on how your AllenBrainObservatory data is saved and structured.

ColinConwell avatar Jun 13 '22 20:06 ColinConwell