Clay-foundation
environment setup has invalid section in yaml and dependency conflicts on Ubuntu 22.04 with CUDA GPU
👋 I'm poking around the yaml to see what the fix is for my machine, not sure if others are running into this. I'm using the latest version of mamba.
# rave at rave-desktop in ~/clay-model on git:main ● [15:10:19]
→ mamba env create --file environment.yml
EnvironmentSectionNotValid: The following section on '/home/rave/clay-model/environment.yml' is invalid and will be ignored:
- platforms
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: failed
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: failed
LibMambaUnsatisfiableError: Encountered problems while solving:
- package torchgeo-0.5.2-pyhd8ed1ab_0 requires segmentation-models-pytorch >=0.2, but none of the providers can be installed
- package pylance-0.14.1-py311h6a0c370_0 requires pyarrow >=12,<15.0.1, but none of the providers can be installed
Could not solve for environment specs
The following packages are incompatible
├─ lancedb ~=0.10.2 is installable with the potential options
│ ├─ lancedb 0.10.2 would require
│ │ └─ pylance 0.14.1 with the potential options
│ │ ├─ pylance 0.14.1 would require
│ │ │ └─ pyarrow >=12,<15.0.1 with the potential options
│ │ │ ├─ pyarrow [12.0.0|12.0.1|...|16.1.0] would require
│ │ │ │ └─ python_abi 3.10.* *_cp310, which can be installed;
│ │ │ ├─ pyarrow [12.0.0|12.0.1|...|15.0.0], which can be installed;
│ │ │ ├─ pyarrow [12.0.0|12.0.1|...|16.1.0] would require
│ │ │ │ └─ python_abi 3.8.* *_cp38, which can be installed;
│ │ │ ├─ pyarrow [12.0.0|12.0.1|...|16.1.0] would require
│ │ │ │ └─ python_abi 3.9.* *_cp39, which can be installed;
│ │ │ └─ pyarrow [13.0.0|14.0.0|...|16.1.0] would require
│ │ │ └─ python_abi 3.12.* *_cp312, which can be installed;
│ │ ├─ pylance 0.14.1 would require
│ │ │ └─ python_abi 3.10.* *_cp310, which can be installed;
│ │ ├─ pylance 0.14.1 would require
│ │ │ └─ python_abi 3.12.* *_cp312, which can be installed;
│ │ └─ pylance 0.14.1 would require
│ │ └─ python_abi 3.9.* *_cp39, which can be installed;
│ ├─ lancedb 0.10.2 would require
│ │ └─ python_abi 3.10.* *_cp310, which can be installed;
│ ├─ lancedb 0.10.2 would require
│ │ └─ python_abi 3.12.* *_cp312, which can be installed;
│ └─ lancedb 0.10.2 would require
│ └─ python_abi 3.9.* *_cp39, which can be installed;
├─ pyarrow ~=16.1.0 is installable with the potential options
│ ├─ pyarrow [12.0.0|12.0.1|...|16.1.0], which can be installed (as previously explained);
│ ├─ pyarrow [12.0.0|12.0.1|...|16.1.0], which can be installed (as previously explained);
│ ├─ pyarrow [12.0.0|12.0.1|...|16.1.0], which can be installed (as previously explained);
│ ├─ pyarrow [13.0.0|14.0.0|...|16.1.0], which can be installed (as previously explained);
│ └─ pyarrow 16.1.0 conflicts with any installable versions previously reported;
├─ python ~=3.11.0 is not installable because it requires
│ └─ python_abi 3.11.* *_cp311, which conflicts with any installable versions previously reported;
├─ timm ~=0.9.16 is requested and can be installed;
└─ torchgeo ~=0.5.2 is not installable because it requires
└─ segmentation-models-pytorch >=0.2 but there are no viable options
├─ segmentation-models-pytorch [0.2.0|0.2.1|0.3.0|0.3.1] would require
│ └─ timm 0.4.12 , which conflicts with any installable versions previously reported;
├─ segmentation-models-pytorch 0.3.2 would require
│ └─ timm 0.6.12 , which conflicts with any installable versions previously reported;
└─ segmentation-models-pytorch 0.3.3 would require
└─ timm 0.9.2 , which conflicts with any installable versions previously reported.
I can install from the lockfile successfully following these instructions, might be an upstream issue with mamba or how a dependency specifies it's own dependencies. https://clay-foundation.github.io/model/getting-started/installation.html#advanced
You're hitting into 2 separate dependency solving issues:
LibMambaUnsatisfiableError: Encountered problems while solving:
- package torchgeo-0.5.2-pyhd8ed1ab_0 requires segmentation-models-pytorch >=0.2, but none of the providers can be installed
- package pylance-0.14.1-py311h6a0c370_0 requires pyarrow >=12,<15.0.1, but none of the providers can be installed
The first one is because torchgeo depends on smp which has a hard pin on timm=0.9.2 (https://github.com/conda-forge/segmentation-models-pytorch-feedstock/pull/22#discussion_r1511659865). Second one is lancedb=0.10.2 depends on pylance=0.14.1 which has a upper pin on pyarrow<15.0.1.
I've opened a PR to refresh the lockfile at https://github.com/Clay-foundation/model/pull/310. Could you test installing from that branch and run through a few examples?
