kotaemon [BUG] nano graph not writing the graph

Description

as you can see the nano graph is creating relationships correctly but at the end it does not write the graph. Im using gpt4-o-mini and text-embedding-3-large

INFO:openai._base_client:Retrying request to /chat/completions in 0.487440 seconds INFO:openai._base_client:Retrying request to /chat/completions in 0.860676 seconds INFO:httpx:HTTP Request: POST https://api.openai.com/v1/chat/completions "HTTP/1.1 200 OK"

("entity"<|>"Ayers JW"<|>"person"<|>"Ayers JW is a researcher who discusses the potential of behavioral medicine in leading the web data revolution.")## ("entity"<|>"Butler D"<|>"person"<|>"Butler D is an author who critiques Google's approach to flu prediction, highlighting its inaccuracies.")## ("entity"<|>"Huang J"<|>"person"<|>"Huang J is a researcher involved in examining the marketing of electronic cigarettes on Twitter.")## ("entity"<|>"Myslín M"<|>"person"<|>"Myslín M is a researcher who uses Twitter to study smoking behavior and perceptions of emerging tobacco products.")## ("entity"<|>"Chou WS"<|>"person"<|>"Chou WS is a researcher who analyzes obesity in social media through a mixed methods approach.")## ("entity"<|>"Dasarathy B"<|>"person"<|>"Dasarathy B is an author who provides an introductory survey on nearest neighbor concepts and techniques.")## ("entity"<|>"Fleiss J"<|>"person"<|>"Fleiss J is an author known for his work on statistical methods for rates and proportions.")## ("entity"<|>"Taiwan"<|>"geo"<|>"Taiwan is a location where the 18th Pacific-Asia Conference on Knowledge Discovery and Data Mining was held.")## ("entity"<|>"J Med Internet Res"<|>"organization"<|>"J Med Internet Res is a journal that publishes research related to medical internet research and health informatics.")## ("entity"<|>"Transl Behav Med"<|>"organization"<|>"Transl Behav Med is a journal that features research on behavioral medicine and its applications.")## ("entity"<|>"Tob Control"<|>"organization"<|>"Tob Control is a journal that focuses on tobacco control research and public health implications.")## ("entity"<|>"Statistical Methods for Rates and Proportions"<|>"event"<|>"Statistical Methods for Rates and Proportions is a significant work that discusses statistical techniques relevant to classification tasks.")## ("relationship"<|>"Ayers JW"<|>"J Med Internet Res"<|>"Ayers JW's research is published in J Med Internet Res, indicating a direct connection between the researcher and the journal."<|>8)## ("relationship"<|>"Butler D"<|>"J Med Internet Res"<|>"Butler D's critique of Google's flu prediction is featured in J Med Internet Res, linking his work to the journal."<|>7)## ("relationship"<|>"Huang J"<|>"Tob Control"<|>"Huang J's research on electronic cigarette marketing is published in Tob Control, establishing a relationship between the researcher and the journal."<|>8)## ("relationship"<|>"Myslín M"<|>"J Med Internet Res"<|>"Myslín M's study on smoking behavior is published in J Med Internet Res, indicating a connection between the researcher and the journal."<|>9)## ("relationship"<|>"Chou WS"<|>"Transl Behav Med"<|>"Chou WS's analysis of obesity in social media is published in Transl Behav Med, linking the researcher to the journal."<|>8)## ("relationship"<|>"Dasarathy B"<|>"Statistical Methods for Rates and Proportions"<|>"Dasarathy B's work on nearest neighbor techniques is discussed in the context of Statistical Methods for Rates and Proportions, establishing a relationship."<|>6)## ("relationship"<|>"Fleiss J"<|>"Statistical Methods for Rates and Proportions"<|>"Fleiss J's contributions to statistical methods are foundational to the work titled Statistical Methods for Rates and Proportions, indicating a strong relationship."<|>9)## ("relationship"<|>"Taiwan"<|>"18th Pacific-Asia Conference on Knowledge Discovery and Data Mining"<|>"Taiwan is the location where the conference was held, establishing a geographical relationship with the event."<|>10)<|COMPLETE|>

INFO:openai._base_client:Retrying request to /chat/completions in 0.409987 seconds INFO:openai._base_client:Retrying request to /chat/completions in 0.997307 seconds INFO:httpx:HTTP Request: POST https://api.openai.com/v1/chat/completions "HTTP/1.1 200 OK"

("entity"<|>"Agarwal A"<|>"person"<|>"Agarwal A is an author involved in sentiment analysis research, contributing to the workshop on languages in social media.")## ("entity"<|>"Xie B"<|>"person"<|>"Xie B is a co-author of the sentiment analysis study, collaborating on research related to Twitter data.")## ("entity"<|>"Vovsha I"<|>"person"<|>"Vovsha I is a contributor to the sentiment analysis research presented at the workshop.")## ("entity"<|>"Rambo w O"<|>"person"<|>"Rambo w O is an author associated with the sentiment analysis of Twitter data.")## ("entity"<|>"Passonneau R"<|>"person"<|>"Passonneau R is a co-author of the research on sentiment analysis presented at the workshop.")## ("entity"<|>"Cole-Lewis H"<|>"person"<|>"Cole-Lewis H is the lead author of the study assessing electronic cigarette-related tweets for sentiment and content.")## ("entity"<|>"Varghese A"<|>"person"<|>"Varghese A is a co-author of the study on electronic cigarette-related tweets, contributing to the research findings.")## ("entity"<|>"Sanders A"<|>"person"<|>"Sanders A is a co-author involved in the sentiment analysis of electronic cigarette-related tweets.")## ("entity"<|>"Schwarz M"<|>"person"<|>"Schwarz M is a co-author of the research paper assessing electronic cigarette-related tweets.")## ("entity"<|>"Pugatch J"<|>"person"<|>"Pugatch J is a co-author contributing to the study on electronic cigarette-related tweets.")## ("entity"<|>"Augustson E"<|>"person"<|>"Augustson E is a co-author of the research paper on electronic cigarette-related tweets.")## ("entity"<|>"Workshop on Languages in Social Media"<|>"event"<|>"The Workshop on Languages in Social Media is an event where research on sentiment analysis of Twitter data was presented.")## ("entity"<|>"Journal of Medical Internet Research"<|>"organization"<|>"The Journal of Medical Internet Research is the publication where the study on electronic cigarette-related tweets was originally published.")## ("entity"<|>"Portland, Oregon"<|>"geo"<|>"Portland, Oregon is the location where the Workshop on Languages in Social Media took place.")## ("relationship"<|>"Agarwal A"<|>"Workshop on Languages in Social Media"<|>"Agarwal A presented research at the Workshop on Languages in Social Media, indicating a direct involvement in the event."<|>8)## ("relationship"<|>"Xie B"<|>"Workshop on Languages in Social Media"<|>"Xie B contributed to the research presented at the Workshop on Languages in Social Media, showing a connection to the event."<|>7)## ("relationship"<|>"Vovsha I"<|>"Workshop on Languages in Social Media"<|>"Vovsha I was involved in the research presented at the Workshop on Languages in Social Media, linking them to the event."<|>7)## ("relationship"<|>"Cole-Lewis H"<|>"Journal of Medical Internet Research"<|>"Cole-Lewis H's study on electronic cigarette-related tweets was published in the Journal of Medical Internet Research, establishing a relationship between the author and the organization."<|>9)## ("relationship"<|>"Varghese A"<|>"Journal of Medical Internet Research"<|>"Varghese A's contributions to the study were published in the Journal of Medical Internet Research, indicating a connection to the organization."<|>8)## ("relationship"<|>"Sanders A"<|>"Journal of Medical Internet Research"<|>"Sanders A's work on the electronic cigarette-related tweets was published in the Journal of Medical Internet Research, linking them to the organization."<|>8)## ("relationship"<|>"Schwarz M"<|>"Journal of Medical Internet Research"<|>"Schwarz M's research on electronic cigarette-related tweets was published in the Journal of Medical Internet Research, establishing a relationship with the organization."<|>8)## ("relationship"<|>"Pugatch J"<|>"Journal of Medical Internet Research"<|>"Pugatch J's contributions to the study were published in the Journal of Medical Internet Research, indicating a connection to the organization."<|>8)## ("relationship"<|>"Augustson E"<|>"Journal of Medical Internet Research"<|>"Augustson E's work on the electronic cigarette-related tweets was published in the Journal of Medical Internet Research, linking them to the organization."<|>8)## ("relationship"<|>"Workshop on Languages in Social Media"<|>"Portland, Oregon"<|>"The Workshop on Languages in Social Media took place in Portland, Oregon, establishing a geographical relationship with the event."<|>10)<|COMPLETE|>

INFO:openai._base_client:Retrying request to /chat/completions in 0.447163 seconds INFO:httpx:HTTP Request: POST https://api.openai.com/v1/chat/completions "HTTP/1.1 200 OK"

("entity"<|>"Heather Cole-Lewis"<|>"person"<|>"Heather Cole-Lewis is the lead author of the study assessing electronic cigarette-related tweets, contributing significantly to the research.")## ("entity"<|>"G Eysenbach"<|>"person"<|>"G Eysenbach is the editor of the proceedings for the Workshop on Languages in Social Media, overseeing the publication process.")## ("entity"<|>"N Zhang"<|>"person"<|>"N Zhang is a peer reviewer for the research presented at the Workshop on Languages in Social Media, providing feedback on the study.")## ("entity"<|>"R Hilscher"<|>"person"<|>"R Hilscher is a peer reviewer for the research presented at the Workshop on Languages in Social Media, contributing to the evaluation of the study.")## ("entity"<|>"10.2196/jmir.4392"<|>"concept"<|>"10.2196/jmir.4392 is the DOI reference for the published study on electronic cigarette-related tweets, providing a unique identifier for the research.")## ("entity"<|>"26307512"<|>"concept"<|>"26307512 is the PMID reference for the study, serving as a unique identifier in the PubMed database.")## ("entity"<|>"Creative Commons Attribution License"<|>"concept"<|>"The Creative Commons Attribution License allows for unrestricted use and distribution of the published work, provided proper citation is given.")## ("entity"<|>"e208"<|>"event"<|>"e208 refers to the specific article number for the publication in the Journal of Medical Internet Research, indicating its place in the journal.")## ("entity"<|>"2011 Jun 23"<|>"event"<|>"2011 Jun 23 is the date when the Workshop on Languages in Social Media was held, marking a significant event in the timeline of the research.")## ("entity"<|>"25.08.2015"<|>"event"<|>"25.08.2015 is the publication date of the study in the Journal of Medical Internet Research, indicating when the research became publicly available.")## ("relationship"<|>"Heather Cole-Lewis"<|>"Journal of Medical Internet Research"<|>"Heather Cole-Lewis's study on electronic cigarette-related tweets was published in the Journal of Medical Internet Research, establishing a relationship with the organization."<|>9)## ("relationship"<|>"G Eysenbach"<|>"Workshop on Languages in Social Media"<|>"G Eysenbach, as the editor, played a role in the proceedings of the Workshop on Languages in Social Media, linking him to the event."<|>7)## ("relationship"<|>"N Zhang"<|>"Workshop on Languages in Social Media"<|>"N Zhang's role as a peer reviewer for the research connects him to the Workshop on Languages in Social Media."<|>6)## ("relationship"<|>"R Hilscher"<|>"Workshop on Languages in Social Media"<|>"R Hilscher's involvement as a peer reviewer for the research links him to the Workshop on Languages in Social Media."<|>6)## ("relationship"<|>"10.2196/jmir.4392"<|>"Journal of Medical Internet Research"<|>"10.2196/jmir.4392 serves as the DOI for the study published in the Journal of Medical Internet Research, establishing a connection to the organization."<|>8)## ("relationship"<|>"26307512"<|>"Journal of Medical Internet Research"<|>"26307512 is the PMID for the study published in the Journal of Medical Internet Research, linking it to the organization."<|>8)## ("relationship"<|>"Creative Commons Attribution License"<|>"Journal of Medical Internet Research"<|>"The Creative Commons Attribution License applies to the publication in the Journal of Medical Internet Research, indicating the terms of use for the research."<|>7)## ("relationship"<|>"e208"<|>"Journal of Medical Internet Research"<|>"e208 is the article number for the publication in the Journal of Medical Internet Research, linking it to the organization."<|>8)## ("relationship"<|>"2011 Jun 23"<|>"Workshop on Languages in Social Media"<|>"2011 Jun 23 is the date of the Workshop on Languages in Social Media, marking a significant event in the timeline of the research."<|>10)## ("relationship"<|>"25.08.2015"<|>"Journal of Medical Internet Research"<|>"25.08.2015 is the publication date of the study in the Journal of Medical Internet Research, establishing a temporal relationship with the organization."<|>9)<|COMPLETE|>

INFO:nano-graphrag:Writing graph with 0 nodes, 0 edgeselations(duplicated)

Reproduction steps

1. Go to '...'
2. Click on '....'
3. Scroll down to '....'
4. See error

Screenshots

![DESCRIPTION](LINK.png)

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Oct 31 '24 14:10 vipervs

Ok it was working with Claude 3 Haiku:

INFO:nano-graphrag:Writing graph with 290 nodes, 188 edges

Nov 01 '24 08:11 vipervs

@vipervs Please also raise your request and model configuration to https://github.com/gusye1234/nano-graphrag/. (as mentioned in the other issue).

Nov 01 '24 09:11 taprosoft