BUG: IQTree 2.1.12 fails to run on input with ERROR: Tree taxa and alignment sequence do not match (see above)

[MinhyukPark]

https://groups.google.com/g/iqtree/c/ZxrAty8br0E/m/75inHxQTAwAJ

Linked to the google discussion. Attaching files here.

iqtree_bug_report.tar.gz

[Sanrrone]

Same here, using 2.1.3

[Rob-murphys]

Can confirm, this bug still exists in 2.1.3. Any insight in how to avoid it?

[SLAment]

Hi! For anybody looking, I also get this problem if I use 2.2.0 with my data, but I switched to 2.2.3 in conda and it seems to be working correctly now.