ChristianEschen

Hello Nice github repository. I am trying your 103-layer tiramisu code. It seems to me that there is no skip-connections, or maybe I have misunderstood something. Furthermore. When I train...

Discriminator output size

1

Hi I have found some difficulties understanding the receptive field in the discriminator. The discriminator takes a 256x256 input and discriminates 30x30 patches with receptive field equal 70x70. I see...

Multi instance learning with data from multiple files

4

I am trying to build a multi-instance learning pipeline for multiple files (dicom files). I am inspired by the multi-instance learning workflow for WSI data described in this notebook: (https://github.com/Project-MONAI/tutorials/tree/main/pathology/multiple_instance_learning)....

I have some data consisting of 3D arrays. I try to modify the network to accept the data. Which functions should I change? I have changed the "data.py" to load...

Training semantic segmentation on greyscale images

9

I am using the format to train the network: python issegm/voc.py --gpus 1 --split train --data-root ${New_database} --output output --model ${New_database}_rna-a1_cls${Number_of_classes} --batch-images 4 --crop-size 500 --origin-size 512 --scale-rate-range 0.7,1.3 --weights...

Problem writing x-ray angiography data (2D+ time)

2

Hi. I try to use the software to write a DICOM SEG file for x-ray angiography images (2D+time). The files can be found here: http://www.rubomedical.com/dicom_files/dicom_viewer_0002.zip However, I get the following...

Difficulty continue self supervised pre training on custom dataset

2

Hello, I'm experiencing challenges training the model on a custom dataset consisting of medical images. Environment & Setup: GPUs: 8 x A100 40GB Batch Size: 32 per GPU (Total: 256)...

Hi I think you are missing the piece of code used for Pixel class assignment (Algorithm 2 in the paper) Could you please upload it :-) ?

Hi Thank you for this really nice work! Unfortunately, you forgot to upload training and validation data. Is it possible to upload the data? Best regards Christian