Report Metric Development relies on datTest which is created in CODE/31

[stephlocke]

The report only sources the 30 file, but datTest is created in 31. As a result the report should be updated to source both files to ensure it works in a standalone fashion:

source("CODE/30_glmnet_model.R", echo = FALSE)
source("CODE/31_glmnet_model_evaluation.R", echo = FALSE)

[stephlocke]

Looks like PR #94 did not involve updating the reports ... a number of the others also expect datTest and glm_pred

[geneorama]

@stephlocke Yes. Those updates for in PR #94 were in response to something else, and I never got a chance to go back and fix the inputs for the report (which was a work in progress anyway). As such the path from the data to the report is currently broken.

[geneorama]

@stephlocke Granted, this isn't a very satisfying solution, but you should be able to checkout commit 150e399782714e4f597e07956eb3161a2b389628, and that should allow you to compile the document. So, at the command line git checkout 150e399. Nothing's changed yet in the model, so you'd have the same numbers.