ChangxuFan

examples/recommendations for ATAC/Dnase-seq data

2

Dear developers, This message comes from a very confused graduate student. Briefly, I'm trying to adopt the bpnet framework to my ATAC and Dnase-seq data (to avoid eyeballing motif scan...

Only a subset of homer motifs is available in this package (332 out of 436). I would highly appreciate it if the script used to convert homer motifs into PWM...

parameter tweaking for Dnase/ATAC-seq data

1

Dear developers, I wonder if there is documentation/example for training based on Dnase/ATAC-seq input? I would highly appreciate suggestions on parameter tweaking!! It seems ATAC/Dnase are supported model architectures from...