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Bioformats not finding Python Javabridge?

Open u2056710 opened this issue 4 years ago • 0 comments

Hi. So I'm new here, will try to post as much info as I can.

I have installed javabridge, using pip intstall python-javabridge. it works, and I know that because i can run import javabridge javabridge.start_vm() in python without any errors.

Next, to install python-bioformats, I try pip install python-bioformats, however it returns an error - here is the bit that (I think) is most important:

Running setup.py clean for python-javabridge Failed to build python-javabridge Installing collected packages: python-javabridge, boto3, python-bioformats

I think what the issue is is that Python-Bioformats is not finding the right version of python-javabridge? Not sure how to overcome this, but I'm really desperate to get bioformats working!

Thanks in advance for your help!

u2056710 avatar Jan 22 '21 16:01 u2056710