python-bioformats
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Bioformats not finding Python Javabridge?
Hi. So I'm new here, will try to post as much info as I can.
I have installed javabridge, using pip intstall python-javabridge. it works, and I know that because i can run
import javabridge javabridge.start_vm()
in python without any errors.
Next, to install python-bioformats, I try pip install python-bioformats, however it returns an error - here is the bit that (I think) is most important:
Running setup.py clean for python-javabridge
Failed to build python-javabridge
Installing collected packages: python-javabridge, boto3, python-bioformats
I think what the issue is is that Python-Bioformats is not finding the right version of python-javabridge? Not sure how to overcome this, but I'm really desperate to get bioformats working!
Thanks in advance for your help!