CellProfiler
CellProfiler copied to clipboard
display image shows evenly sized images on different scales
Results window shows side-to-side original image and processed image on different scales, although there are the same size.
To Reproduce Steps to reproduce the behavior:
- Open 3d_monolayer pipeline
- Add images
- In test mode, run first step
- Display window opens with unevenly sized images
Expected both original and processed images to be displayed on the same scale.
Screenshots
Desktop (please complete the following information):
- OS: MacOS 10.15.7
- CellProfiler Version 4.2.1
- Downloaded from the website
- Java 1.8.0_192
Hmmm, I can't reproduce, either in 4.2.1 built or current master (L&R), albeit MacOS 11.6 . Do you see this in all 3D displays, or just RescaleIntensity in particular?

It's present in some displays, but not always.
I did first few steps of the pipeliene and it seems like it depends on whether you're running it in test or analysis mode (perhaps, related to how windows are created?).
Step | Displayed correctly, test mode | Displayed correctly, analysis |
---|---|---|
RescaleIntensity #5 | :x: | :x: |
Resize #6 | :x: | :x: |
MedialFilter #7 | ✅ | :x: |
Threshold #8 | ✅ | :x: |
RemoveHoles #9 | ✅ | :x: |
Watershed #10 | ✅ | :x: |
ResizeObjects #11 | ✅ | :x: |
ErodeObjects #12 | :x: | :x: |
Steps #5 to #11 in test mode
Steps #5 to #11 in analysis mode