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Update requirements.txt to include cellpose

Open hinerm opened this issue 3 years ago • 3 comments

hinerm avatar Sep 09 '21 17:09 hinerm

@bethac07 @alicelucas this was necessary because without cellpose installed, other CellProfiler-plugins break (i.e. RunImageJScript) because the runcellpose.py setup fails.

hinerm avatar Sep 09 '21 17:09 hinerm

Hmmm, each plugin should be independent in its loading, and I can't confirm either on my system - I had both modules importable, pip uninstalled cellpose, and it stopped loading in but RunImageJ did not...

image

bethac07 avatar Sep 09 '21 21:09 bethac07

@bethac07 thanks for looking at it. I was getting runtime errors from pyimagej that seemed to go away after installing cellpose, but I can't reproduce either now so maybe it was a RunImageJScript configuration issue. Sorry for the distraction!

hinerm avatar Sep 10 '21 14:09 hinerm

Closing this PR because we are currently overhauling how we handle dependencies (FYI @callum-jpg, in case this helps you)

ErinWeisbart avatar May 09 '23 19:05 ErinWeisbart