Perl5-IDEA
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Warning on using IO::Handle methods
printf method is defined in IO::Handle module

I don't know if it's possible to add definition for filehandle OO methods, but that would prevent warnings from showing up.
Thanks.
Have you deparsed XSubs?
Probably yes, I have _Deparsed_XSubs.pm in place.
Just run Tools -> Perl5 -> Re-Generate XSubs Declarations if that's what you mean.
Is IO::Handle::printf there?
Try to specify type of $file explicitly with annotation and see if it helps.
Can we close this one?