networkanalysis

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Hello! I deployed the jar file using the following command: java -cp networkanalysis-1.1.0.jar nl.cwts.networkanalysis.run.RunNetworkClustering -r 1 -o out.txt input.txt and I get this error: "Error while creating network: Elements of...

piyushapple1998

java.lang.ArrayIndexOutOfBoundsException when using -q Modularity

6

The following command `java -cp ~/Bioinformatics/networkanalysis/build/libs/networkanalysis-1.1.0-5-ga3f342d.jar nl.cwts.networkanalysis.run.RunNetworkClustering -q CPM -m 1 -w -o /tmp/edges_clustering.txt edges.txt` runs just fine. However, if the -q option is set to "Modularity", I get the...

ghost

Added 64-bits array capabilities

2

This PR adds 64-bits capabilities to the `networkanalysis` package because natives arrays in Java are unfortunately limited to 32-bits. There are four new classes added to the `nl.cwts.util` package: -...

vtraag

Hi, Thank you for developing this nice library! I have been trying to understand how weights affect the resulting detected communities and I found something which I did not expect....

paula-tataru

Question about clustering results

3

Hi, Thanks for this fantastic package! I have an issue related to the output of the clustering algorithm. I have runned the following code in python: ``` os.system("java -cp /Applications/networkanalysis/networkanalysis-1.3.0.jar...

gcasamat

This fixes one problem that was noted in #25, namely that clusters are not ordered consecutively after removing small clusters.

vtraag

We ignore all self-loops upon reading a particular network. Although this works fine for CPM (as self-loops have no effect there) this is not entirely correct for modularity. In particular,...

vtraag

Thank you for all you hard work! I'm looking at the [`leidenalg` python package](https://github.com/vtraag/leidenalg) as well as this repo, my use-case is multi-level, temporal community detection with a minimum community...

ravwojdyla