Kang Hu

> One issue indicates that the BLAST database is missing (Step 2). Normally, this step uses `makeblastdb` to generate an index for the genome (`genome.fa.clean`) in your working directory (`/mnt/sdb/zhangbh/pangenmics/workdir/pan_run_hite_single_e11dbde7-795e-4fd5-8d37-836d370f29ad`)....

Perhaps you could modify the code in `module/pan_run_hite_single.py` responsible for removing the temporary directory to: ```python if os.path.exists(temp_dir) and debug != 1: shutil.rmtree(temp_dir) ``` Then, when running the command, add...

That's really strange. As you can see in line 323 of `main.py`, we use `shutil.copy2` to copy the genome file into the temporary directory. In theory, this operation shouldn't change...