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[Feature Request] Addition of adjusted PValues to GSEA Result

Open bvenn opened this issue 2 years ago • 0 comments

In 9/10 cases when performing an gene set enrichment analysis it is required to perform a multiple testing correction. It would beneficial to add the following fields to the GSEAResult type:

  1. FDR(BH) -> false discovery rate based on the final GSEA result array
  2. QValue -> qvalue based on the final GSEA result array
  3. PI0 -> quality parameter to check the qvalue for validity

bvenn avatar Jan 04 '23 14:01 bvenn