Chris Bridge
Chris Bridge
Branch for NAMIC project week 40. [Project page](https://projectweek.na-mic.org/PW40_2024_GranCanaria/Projects/ImprovingExperienceWithVolumetricSegmentationsInHighdicom/). ### Goals Add support for working with "volumetric": segmentations, i.e. regularly spaced frames in a 3D frame of reference. Specifically: - Upon...
Add highdicom as an entry to the Contributing Equipment Sequence of any SOP Instance that it creates See: - https://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_C.12.html#table_C.12-1 - https://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_C.12.html#sect_C.12.1.1.5 cc @dclunie
There is quite some boilerplate required to correctly set up information in the Subject Context when constructing SRs. This information is optional according to the standard but required by some...
The [TID1001 Subject Context](https://dicom.nema.org/medical/dicom/current/output/chtml/part16/chapter_A.html#sect_TID_1001) template within TID1500 SRs is optional and only needs to be provided if the information is not inherited from the source images. Slim requires it in...
Slim does not seem to display graphical annotations stored in comprehensive 3D SRs if those SRs also contain measurements with either of the following codes: - (SCT, "42798000", "Area") -...
Microscopy Bulk Simple Annotations that are stored using AnnotationCoordinateType "2D" do not display at all in slim. They do not even appear listed under "Annotation Groups" on the right hand...
I can get bulk annotations (Microscopy Bulk Simple Annotations) to display correctly in Slim (if I use frame of reference coordinates). They show up as points in a turquoise colour....
Add operators to write out GSPS DICOM objects for: - Object detection (bounding box) - Segmentations (overlay boundaries) We can leverage highdicom to do this
@igoroctaviano @fedorov @dclunie Currently, the specific combination of segmentations with SegmentationType="FRACTIONAL", DimensionOrganizationType="TILED_FULL" and multiple segments do not display correctly in Slim. I tested the following combinations locally with dcm4chee: SegmentationType=BINARY,...