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Crawler result (NiMARE: Neuroimaging Meta-Analysis Research Environment)

Open conp-bot opened this issue 2 years ago • 23 comments

Description

Created NiMARE: Neuroimaging Meta-Analysis Research Environment

Checklist

Mandatory files and elements:

  • [x] A README.md file, at the root of the dataset
  • [x] A DATS.json file, at the root of the dataset
  • [ ] If configuration is required (for instance to enable a special remote), a config.sh script at the root of the dataset
  • [x] A DOI (see instructions in [contribution guide] (https://github.com/CONP-PCNO/conp-dataset/blob/master/.github/CONTRIBUTING.md), and corresponding badge in README.md

Functional checks:

  • [x] Dataset can be installed using DataLad, recursively if it has sub-datasets
  • [x] Every data file has a URL
  • [x] Every data file can be retrieved or requires authentication
  • [ ] DATS.json is a valid DATs model
  • [ ] If dataset is derived data, raw data is a sub-dataset

conp-bot avatar Jun 08 '22 20:06 conp-bot

This PR is stale because it has been open 45 days with no activity. Remove stale label or comment or this will be closed in 20 days.

github-actions[bot] avatar Jul 25 '22 03:07 github-actions[bot]

This PR was closed because it has been stalled for 20 days with no activity.

github-actions[bot] avatar Aug 15 '22 03:08 github-actions[bot]

This PR is stale because it has been open 45 days with no activity. Remove stale label or comment or this will be closed in 20 days.

github-actions[bot] avatar Sep 30 '22 04:09 github-actions[bot]

This PR was closed because it has been stalled for 20 days with no activity.

github-actions[bot] avatar Oct 21 '22 03:10 github-actions[bot]

This PR is stale because it has been open 45 days with no activity. Remove stale label or comment or this will be closed in 20 days.

github-actions[bot] avatar Dec 07 '22 02:12 github-actions[bot]

This PR was closed because it has been stalled for 20 days with no activity.

github-actions[bot] avatar Dec 28 '22 02:12 github-actions[bot]

This PR is stale because it has been open 45 days with no activity. Remove stale label or comment or this will be closed in 20 days.

github-actions[bot] avatar Mar 21 '23 02:03 github-actions[bot]

still under review.

emmetaobrien avatar Mar 21 '23 17:03 emmetaobrien

This PR is stale because it has been open 45 days with no activity. Remove stale label or comment or this will be closed in 20 days.

github-actions[bot] avatar May 07 '23 02:05 github-actions[bot]

This PR was closed because it has been stalled for 20 days with no activity.

github-actions[bot] avatar May 28 '23 02:05 github-actions[bot]

This PR is stale because it has been open 45 days with no activity. Remove stale label or comment or this will be closed in 20 days.

github-actions[bot] avatar Jul 14 '23 02:07 github-actions[bot]

still under review

emmetaobrien avatar Jul 17 '23 14:07 emmetaobrien

This PR is stale because it has been open 45 days with no activity. Remove stale label or comment or this will be closed in 20 days.

github-actions[bot] avatar Sep 02 '23 01:09 github-actions[bot]

This PR was closed because it has been stalled for 20 days with no activity.

github-actions[bot] avatar Sep 22 '23 01:09 github-actions[bot]

not confirmed defunct yet.

emmetaobrien avatar Sep 26 '23 13:09 emmetaobrien

On the zenodo archive, only the following information is available:

Dataset provided for NeuroLibre preprint. Author repo: https://github.com/NBCLab/nimare-paper NeuroLibre fork:https://github.com/roboneurolibre/nimare-paper

Which is automatically generated. If we need more organic descriptions, we may need the authors to provide them.

If there is anything else needed for the crawler to perform better, I can include it in the workflow.

agahkarakuzu avatar Sep 27 '23 13:09 agahkarakuzu

This PR is stale because it has been open 45 days with no activity. Remove stale label or comment or this will be closed in 20 days.

github-actions[bot] avatar Nov 12 '23 02:11 github-actions[bot]

This PR is stale because it has been open 45 days with no activity. Remove stale label or comment or this will be closed in 20 days.

github-actions[bot] avatar Dec 29 '23 01:12 github-actions[bot]

This PR is stale because it has been open 45 days with no activity. Remove stale label or comment or this will be closed in 20 days.

github-actions[bot] avatar Feb 20 '24 01:02 github-actions[bot]

This PR is stale because it has been open 45 days with no activity. Remove stale label or comment or this will be closed in 20 days.

github-actions[bot] avatar Apr 06 '24 01:04 github-actions[bot]

This PR is stale because it has been open 45 days with no activity. Remove stale label or comment or this will be closed in 20 days.

github-actions[bot] avatar May 26 '24 02:05 github-actions[bot]

This PR is stale because it has been open 45 days with no activity. Remove stale label or comment or this will be closed in 20 days.

github-actions[bot] avatar Jul 12 '24 02:07 github-actions[bot]

This PR is stale because it has been open 45 days with no activity. Remove stale label or comment or this will be closed in 20 days.

github-actions[bot] avatar Aug 30 '24 02:08 github-actions[bot]

This PR is stale because it has been open 45 days with no activity. Remove stale label or comment or this will be closed in 20 days.

github-actions[bot] avatar Oct 19 '24 02:10 github-actions[bot]

Perhaps we need to start using an LLM to create better descriptions of these Zenodo archives based on their corresponding publications on neurolibre.org. Then we can submit them to the authors as suggestions for updates to their descriptions. For instance, I just pointed Perplexity to the NiMARE page on NeuroLibre and asked to create summary, yielding this (with an introductory phrase I added):

"This is the dataset associated with the NeuroLibre publication for NiMARE (Neuroimaging Meta-Analysis Research Environment), a Python library designed for conducting meta-analyses of neuroimaging data. NiMARE provides a comprehensive set of tools for various meta-analytic methods, including coordinate-based meta-analysis, image-based meta-analysis, and meta-regression. The library aims to standardize and streamline the process of neuroimaging meta-analysis, offering implementations of popular algorithms and supporting different types of data inputs. NiMARE also includes features for dataset extraction, annotation, and visualization, making it a versatile tool for researchers in the field of neuroimaging. By providing a unified framework for meta-analytic techniques, NiMARE contributes to improving reproducibility and facilitating more robust analyses in neuroimaging research."

GHPBZ avatar Oct 21 '24 17:10 GHPBZ

Are there free APIs for LLMs yet?

agahkarakuzu avatar Oct 22 '24 11:10 agahkarakuzu

I've only played around with offline LLMs (e.g., through Ollama) but I found this compilation of APIs.

GHPBZ avatar Oct 22 '24 12:10 GHPBZ

That's amazing, thank you! I will consider this for the next coding sprint of NeuroLibre.

agahkarakuzu avatar Oct 22 '24 12:10 agahkarakuzu

This PR is stale because it has been open 45 days with no activity. Remove stale label or comment or this will be closed in 20 days.

github-actions[bot] avatar Dec 07 '24 02:12 github-actions[bot]

This PR was closed because it has been stalled for 20 days with no activity.

github-actions[bot] avatar Dec 28 '24 02:12 github-actions[bot]