maximum-likelihood-relatedness-estimation

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fix compilation errors on modern g++/c++ compiler (Ubuntu 20)

1

These changes fix the compilation errors that occur on running make (e.g. #19) using new compilers such as those found on Ubuntu 20. I successfully compiled with: `g++ (Ubuntu 9.3.0-17ubuntu1~20.04)...

didillysquat

Makefile:12: recipe for target 'lcmlkin' failed

1

I have this error when installing: Makefile:12: recipe for target 'lcmlkin' failed make: *** [lcmlkin] Error 1 I have g++ 7.4.0 and clang 6.0.0 Any help would be much appreciated....

GeorgeFoody

In this case I have successfully run lcmlkin on one vcf while a segmentation fault was produced when running another vcf. The two vcfs were produced in exactly the same...

blarison

error in install

4

Please, can you help me, I tried to install lcMLkin, but I got the following message after downloading and writing „make”. Is there a bug somewhere in the files? Or...

szecsenyinagy

I get the following error when trying to run lcMLkin: ``` $ ~/apps/maximum-likelihood-relatedness-estimation/lcmlkin -i targeted.thinned.recode.vcf -o pairwise.relate.txt -g all -t 8 lcMLkin v0.5.0 ============================== using 8 threads Populating Data [2019-05-09...

alizraksi

SNPbam2vcf.py, line 247, KeyError: 'RG'

21

I am running the following command: python SNPbam2vcf.py ancAnatBam.list BonBarTep.vcf 1000G_D100KApart.list ancAnatBam.list contains the paths of a list of Bam files. 1000G_D100KApart.list is the snp list in the format requested....

mcetincompbio

What fields are required on the VCF file?

5

Hi, My VCF file has the PL field. I am trying to format the missing value to use this file as input. The original file looks like ``` Chr01 11582413...

inti