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Parsing SMILES with heavy atoms

Open joannawolthuis opened this issue 4 years ago • 1 comments

Hi there,

First of all, thanks for your work on this package! I make heavy use of it in my mass spectrometry database parser package. I recently was asked if I could also allow users to provide SMILES structures of heavy labeled (13C) compounds as input. However, i notice that upon parsing SMILES with 13Cs, the string either fails to parse (rarely) or changes the heavy C back to a regular C (mol2formula does not have any heavy atoms included). Is there any functionality to work with heavy labeled atoms?

Kind regards, Joanna

joannawolthuis avatar Feb 03 '21 14:02 joannawolthuis