Centers for Disease Control and Prevention

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Results 19 repositories owned by Centers for Disease Control and Prevention

Rnssp

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A Signature R package for the National Syndromic Surveillance Program (NSSP) at the Centers for Disease Control and Prevention (CDC). A collection of tools, classes and functions that supports the Com...

verified publisher icon CDCgov

prime-reportstream

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ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.

verified publisher icon CDCgov

tostadas

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🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

verified publisher icon CDCgov

phdi

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verified publisher icon CDCgov

mycosnp-nf

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CDCgov/mycosnp-nf

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seqsender

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Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories

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ww-inference-model

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An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observatio...

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MIRA

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MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation

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irma

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IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.

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