GNPS_Workflows
GNPS_Workflows copied to clipboard
CCMS-UCSD
Public Workflows at GNPS
- [x] Create negative control failure cases (e.g. missing columns, incorrect delimeter) - [x] MZMine2 - Implement delimiter is correct - [x] MZMine2 - Implement missing columns
Hi Ming, It seems the Qiime2 Emperor plots are not working for this feature-based MN job. I'm not sure if it could have to do with the formatting? It's a...
Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.3 to 1.26.5. Release notes Sourced from urllib3's releases. 1.26.5 :warning: IMPORTANT: urllib3 v2.0 will drop support for Python 2: Read more in the v2.0 Roadmap Fixed...
![dependabot[bot] avatar](https://avatars.githubusercontent.com/in/29110?v=4 "dependabot[bot] avatar"){kind=avatar}
This is for testing, probably not going to merge
[Example Link](https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=297005032b3a4a12a7654138b3e373ea)
Using this code to do lookups: https://github.com/bjonnh/wikidata_molecules_for_gnps
Address this part of the code: https://github.com/CCMS-UCSD/GNPS_Workflows/blob/3872e8cf39d54cbecf2d28b1757acddbb17970d7/feature-based-molecular-networking/tools/feature-based-molecular-networking/scripts/create_network_edges_outputformatting.py#L19 Seems to be giving bad annotations. Reported by mahbobeh.