GNPS_Workflows
GNPS_Workflows copied to clipboard
CCMS-UCSD
Public Workflows at GNPS
When facet is selected in PLOTTER, there is no way to go back. Add a null option to allow going back to one plot. Example: http://dorresteintesthub.ucsd.edu:6549/?gnps_tall_table_usi=mzdata%3AGNPS%3ATASK-ce85da1063a741d9a2febf08d62d4daf-feature_statistics%2Fdata_long.csv&gnps_quant_table_usi=&gnps_metadata_table_usi=&feature=5&metadata=ATTRIBUTE_Combined_Sample_Location&facet=ATTRIBUTE_Sample_Type&groups=SSA_BF_Air%3BSSA_IB_Air%3BSSA_SS_Air%3BSSA_SIO_Air%3BDOM_BF_SZ%3BDOM_IB_SZ%3BDOM_IB_OW%3BDOM_SS_SZ%3BDOM_SIO_SZ%3BDOM_SIO_OW%3BDOM_Holl_RW&plot_type=box&color=&points_toggle=False&theme=ggplot2&animation_column=&lat_column=None&long_column=None&map_animation_column=&map_scope=world
**Describe the bug** Changes in the Metadata Selection don´t get updated and plot is not shown. Example provided below. **To Reproduce** Steps/Task to reproduce the behavior: 1. Go to 'https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=512c109ee9654ec99acb4267f17ebee3'...
Changes in mass tolerance do not seem to be taken in account. Example job with 0.005 m/z mass tolerance, two peaks can be observed: https://proteomics2.ucsd.edu/ProteoSAFe/result.jsp?task=b57851e217ea49c1a082da3761c388fe&view=view_integration_results  Verification of XIC in...
We should add demo link to google docs with real metadata and annotations explaining whats important.
**Is your feature request related to a problem? Please describe.** For most of the compounds found in poison frogs I have felt frustrated because the Classyfire informartion is not available...
Symptoms are: The only qiime2 outputs are `manifest.tsv` and `metadata.tsv` files. There are no logs or error messages. I was able to run q2-metabolomics and it indicated that there was...
Because there are no SCANS included in the annotation results, it is not possible to map CYCLONOVO annotation results ('ClassificationScore') to the inputed MGF. See here: https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=85d371f5c8e04687838ecbc28ac2dbb6 @bbehsaz also adding...