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GNPS FBMN issue

Open lzlmby opened this issue 1 year ago • 1 comments

I have been running MSDIAL based FBMN analysis. My data is from Thermo Orbitrap. I always get this error:

Columns (0,1,2,6,7,8,9,10,11,12,13,14,15,16,17,18,22,23,24) have mixed types. Specify dtype option on import or set low_memory=False. MSDIAL Traceback (most recent call last): File "/data/ccms-gnps/tools/feature-based-molecular-networking/release_28.2/scripts/reformat_quantification.py", line 135, in main() File "/data/ccms-gnps/tools/feature-based-molecular-networking/release_28.2/scripts/reformat_quantification.py", line 75, in main msdial_formatter.convert_to_feature_csv(args.quantification_table, args.quantification_table_reformatted) File "/data/ccms-gnps/tools/feature-based-molecular-networking/release_28.2/scripts/msdial_formatter.py", line 27, in convert_to_feature_csv scan = record["Alignment ID"] KeyError: 'Alignment ID' Tool execution terminates abnormally with exit code [1]

lzlmby avatar Feb 22 '24 23:02 lzlmby