MeshParty issues

Meshparty no longer loading

1

Hello, I am getting an error now when I attempt to load Meshparty. I was having no issues as recently as a week and half ago when I last ran...

shandran

Error when trying to add annotation to meshwork

## Problem I'm trying to annotate some points in a meshwork (specifically, places where edits have occurred) using `add_annotation`. I am getting an error that is taking me a bit...

bdpedigo

Documentation missing for meshwork module

https://meshparty.readthedocs.io/en/latest/source/meshparty.meshwork.html does not show any class/function API docs for me (as opposed to, say https://meshparty.readthedocs.io/en/latest/source/meshparty.html#module-meshparty.skeleton)

bdpedigo

Is it correct that the computed skeleton is supposed to be on the mesh surface? Anything I did was wrong?

2

I am now testing your package for computing mesh skeleton. Here below is my code using meshparty to compute the skeleton and to visualize the results: ``` from meshparty import...

lxmedai

Add NetworkX 3 compatibility

1

Wondering if there's any fundamental reason to disallow networkx 3? Happy to make a PR if it's just a matter of ensuring everything still works with the new API

bdpedigo

removing trimesh_vtk

This will remove vtk from the base installation

fcollman

Request: Split `MeshParty` into several packages

5

Can we split the skeletonization measures into another package? This package has a lot of bloat around what is otherwise a very useful tool. I am developing [`meshemy`](https://github.com/caniko/meshemy) to manipulate...

caniko