brkraw

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Brkraw CLI for bruker recon of simple cartesian sequences (FLASH, MGE, RARE)

5

**Is your feature request related to a problem? Please describe.** Offline reconstruction is an important part of data control for Scientist since there are many various methods for coil combination,...

timwahoo

The `--output` parameter cannot control the file name (additional elements get auto-added so you need to concatenate with mv to actually get the filenames you want...)

1

```console [deco]~ ❱ brkraw -v brkraw v0.3.10 [deco]~ ❱ brkraw tonii -o lala.nii.gz -s 8 /usr/share/opfvta_brudata/20170411_120358_5682_1_4/ NifTi file is generated... [lala.nii.gz-8-1-TurboRARE] [deco]~ ❱ stat lala.nii.gz stat: cannot statx 'lala.nii.gz': No...

TheChymera

Paravision 360.3.3 and newer introduces compressed sensing as an option for FLASH and RARE sequences. With the new addition of reconstruction tools. The integration of advance reconstruction techniques would be...

timwahoo

Review Comments JOSS, Reviewer Martin Wegrzyn

1

Dear @dvm-shlee et al., my name is Martin Wegrzyn and I am one of the reviewers assigned to your submission to JOSS. Thank you for your work on BrkRaw. The...

mwegrzyn

CSI(MRSI) Data Conversion to nifti

2

- I am trying to convert Bruker CSI data to Nifti. Everything looks OK, except for the excited CSI grid. How I can store it in Nifti? Do you think...

amirshamaei

default readme in BIDS dataset after conversion

2

hey We (BIDS maintainers) are trying to see if we can improve the quality of the average README in BIDS dataset. Those tend to be pretty thin and are missing...

Remi-Gau

Current GitHub version fails to process using JSON

14

@dvm-shlee and @gdevenyi I pulled the current master to take advantage of the fixes implemented in #96 but I cannot convert using `bids_convert` and the -j option. I get: ```...

araikes

Investigate generating NIFTI-MRS standard files

1

https://github.com/wexeee/mrs_nifti_standard

gdevenyi

'VisuAcqGradEncoding' is not defined

1

**Describe the bug** Hello :) I am trying to convert in BIDS an old dataset acquired with pv 5.1. I created the .csv file and the .json template with bids_helper,...

biancadepifanio

Bids_helper quits when method file is missing

1

**Describe the bug** The bids_helper catches an error when the dataset doesn't contain a method file. Even if this is the right behaviour, the script shouldn't break there if I...

mschneider1711