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pdb file doesn't import to M-Nodes

Open AlaaHuwaidi opened this issue 2 years ago • 1 comments

Hi Brady

I am working with phospholipid bilayer it is downloaded from "http://www.fos.su.se/~sasha/SLipids/Downloads.html" in pdb format, when I am uploading it from my Desktop to M-Nodes it shows an error. could you try it by yourself and tell me what to do instead.

Sincerely

AlaaHuwaidi avatar Jul 18 '22 14:07 AlaaHuwaidi

You might have to be more specific with which one is giving you an error.

I have been able to load some of them with the local-file import, but there were errors with the detection of the elements.

I was able to more successfully import some of the files via MDAnalysis using the 'MD Trajectory' import panel, and just choosing a file to be both the topology and the trajectory as below:

image

BradyAJohnston avatar Jul 18 '22 23:07 BradyAJohnston