MolecularNodes DOC: Blender 4.0.1 default spheres for large systems

DOC: Blender 4.0.1 default spheres for large systems

Open tylerjereddy opened this issue 1 year ago • 8 comments

We discussed this a bit on the MDAnalysis discord, but this reproducer is actually different than the real system behavior, but likely problematic nonetheless. I'm providing an MDAnalysis-based Python module that can be used to generate the synthetic data, which can then be loaded into Blender 4.0.1 on MacOS ARM64 (32 GB), and causes a Blender crash in my hands. In fact, I'm not so sure it is a memory related crash in this particular case, so there may be a few things to fix to handle synthetic data like this before I figure out how to reproduce the original memory problem, which may be topology-specific (not sure yet).

Load the output of the following into Molecular Nodes in Blender with .gro as top file, and .xtc as traj file, using presets and no specific selections active. The crash might even come from excessive duplication of the same atoms, not sure, but it looks different from my original hangs.

import MDAnalysis as mda
from MDAnalysis.coordinates.XTC import XTCWriter
from MDAnalysisTests.datafiles import GRO
from tqdm import tqdm


def main():
    # the genuine reproducer had 13.7 M atoms
    u = mda.Universe(GRO)
    # this test system only has 47,681 atoms
    # so the synthetic reproducer will be built up
    # by concatenation
    ratio = int(13.7e6 / u.atoms.n_atoms)
    ag = u.atoms
    for i in tqdm(range(ratio)):
        ag += u.atoms
    print(f"final ag atom count: {ag.n_atoms}")
    ag.write("synthetic_repro.gro")
    # produce a traj with 100 frames to match the real scenario
    writer = XTCWriter("synthetic_repro.xtc",
                       ag.n_atoms,
                       convert_units=True,
                       precision=3)
    for i in tqdm(range(100)):
        writer.write(ag)


if __name__ == "__main__":
    main()

Dec 01 '23 16:12 tylerjereddy

Dec 01 '23 17:12 tylerjereddy

If degeneracy (duplicate coords) is the root cause (and not size alone), I suppose you might just want to error out on that, to at least guard against a hard crash.

Dec 01 '23 17:12 tylerjereddy

I had a play around on both my M2 Pro and my Windows PC, neither crashed when working with the system, and both maintained fairly stable RAM usage when playing back through the trajectory, even when applying different styles. I didn't try the EEVEE Spheres, as this would definitely cause issues & potentially crash when dealing with that many instances.

Can you give more details about what your Geometry Nodes / Molecular Nodes setup is? What styles are you applying, when does the crash happen (during import / playback etc)?

Dec 04 '23 03:12 BradyAJohnston

Crash was during import, I think Eevee is the default until the user changes it, though render view shouldn’t be active. I’ve had more crashes with 4.x than 3.6 LTS.

Maybe I can get more info from a console log somehow? It is definitely reproducible in 4.0.1.

On Sun, Dec 3, 2023 at 20:04 Brady Johnston @.***> wrote:

I had a play around on both my M2 Pro and my Windows PC, neither crashed when working with the system, and both maintained fairly stable RAM usage when playing back through the trajectory, even when applying different styles. I didn't try the EEVEE Spheres, as this would definitely cause issues & potentially crash when dealing with that many instances.

Can you give more details about what your Geometry Nodes / Molecular Nodes setup is? What styles are you applying, when does the crash happen (during import / playback etc)?

— Reply to this email directly, view it on GitHub https://github.com/BradyAJohnston/MolecularNodes/issues/372#issuecomment-1837765376, or unsubscribe https://github.com/notifications/unsubscribe-auth/AB4JOZTL2XB5MVGNYAFWFPDYHU4TNAVCNFSM6AAAAABADD2MR2VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMZXG43DKMZXGY . You are receiving this because you authored the thread.Message ID: @.***>

Dec 04 '23 03:12 tylerjereddy

I'm still having 100 % success rate with reproducing the crash with Blender 4.0.1, so I'll paste the logs below the fold. I'll try to take a look myself in the next few days to see if I can help, but type 11 segfault is a memory issue it seems? Anything look different about our setups beyond that? My M2 max and your M2 pro should be super similar behavior I would think..

MacOS detailed crash report

-------------------------------------
Translated Report (Full Report Below)
-------------------------------------

Process:               Blender [94717]
Path:                  /Applications/Blender.app/Contents/MacOS/Blender
Identifier:            org.blenderfoundation.blender
Version:               4.0.1 (4.0.1 2023-11-17)
Code Type:             ARM-64 (Native)
Parent Process:        zsh [33990]
Responsible:           Terminal [857]
User ID:               28751

Date/Time:             2023-12-04 12:45:48.5281 -0700
OS Version:            macOS 13.6.2 (22G320)
Report Version:        12
Anonymous UUID:        F7404F57-7BF0-7108-6B17-6A85C29106A1

Sleep/Wake UUID:       1A32D710-3503-47E6-9262-DE5E885AEA98

Time Awake Since Boot: 96000 seconds
Time Since Wake:       11721 seconds

System Integrity Protection: enabled

Crashed Thread:        0  Dispatch queue: com.apple.main-thread

Exception Type:        EXC_BAD_ACCESS (SIGSEGV)
Exception Codes:       KERN_INVALID_ADDRESS at 0xffffffff7fffffe0
Exception Codes:       0x0000000000000001, 0xffffffff7fffffe0

Termination Reason:    Namespace SIGNAL, Code 11 Segmentation fault: 11
Terminating Process:   exc handler [94717]

VM Region Info: 0xffffffff7fffffe0 is not in any region.  Bytes after previous region: 18446638517908930529  
      REGION TYPE                    START - END         [ VSIZE] PRT/MAX SHRMOD  REGION DETAIL
      MALLOC_NANO (reserved)   600018000000-600020000000 [128.0M] rw-/rwx SM=NUL  ...(unallocated)
--->  
      UNUSED SPACE AT END

Kernel Triage:
VM - (arg = 0x0) pmap_enter retried due to resource shortage
VM - (arg = 0x0) pmap_enter retried due to resource shortage
VM - (arg = 0x0) pmap_enter retried due to resource shortage
VM - (arg = 0x0) pmap_enter retried due to resource shortage
VM - (arg = 0x0) pmap_enter retried due to resource shortage


Thread 0 Crashed::  Dispatch queue: com.apple.main-thread
0   libsystem_platform.dylib      	       0x19a1ee848 _platform_memmove + 520
1   Blender                       	       0x105d193f8 blender::gpu::MTLStorageBuf::update(void const*) + 296
2   Blender                       	       0x101a09b64 blender::draw::Manager::end_sync() + 52
3   Blender                       	       0x101a0cba8 DRW_draw_render_loop_ex + 936
4   Blender                       	       0x102731b50 view3d_main_region_draw + 220
5   Blender                       	       0x101dbe57c ED_region_do_draw(bContext*, ARegion*) + 760
6   Blender                       	       0x1018752c0 wm_draw_update(bContext*) + 1612
7   Blender                       	       0x101871324 WM_main(bContext*) + 52
8   Blender                       	       0x10117ed80 main + 860
9   dyld                          	       0x199e67f28 start + 2236

Thread 1:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libdispatch.dylib             	       0x19a01099c _dispatch_sema4_wait + 28
2   libdispatch.dylib             	       0x19a011050 _dispatch_semaphore_wait_slow + 132
3   libIlmThread.dylib            	       0x10fda6de8 IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::threadLoop(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>) + 52
4   libIlmThread.dylib            	       0x10fda70a4 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, void (IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::*)(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>), IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider*, std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>>>(void*) + 92
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 2:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libdispatch.dylib             	       0x19a01099c _dispatch_sema4_wait + 28
2   libdispatch.dylib             	       0x19a011050 _dispatch_semaphore_wait_slow + 132
3   libIlmThread.dylib            	       0x10fda6de8 IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::threadLoop(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>) + 52
4   libIlmThread.dylib            	       0x10fda70a4 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, void (IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::*)(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>), IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider*, std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>>>(void*) + 92
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 3:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libdispatch.dylib             	       0x19a01099c _dispatch_sema4_wait + 28
2   libdispatch.dylib             	       0x19a011050 _dispatch_semaphore_wait_slow + 132
3   libIlmThread.dylib            	       0x10fda6de8 IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::threadLoop(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>) + 52
4   libIlmThread.dylib            	       0x10fda70a4 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, void (IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::*)(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>), IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider*, std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>>>(void*) + 92
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 4:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libdispatch.dylib             	       0x19a01099c _dispatch_sema4_wait + 28
2   libdispatch.dylib             	       0x19a011050 _dispatch_semaphore_wait_slow + 132
3   libIlmThread.dylib            	       0x10fda6de8 IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::threadLoop(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>) + 52
4   libIlmThread.dylib            	       0x10fda70a4 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, void (IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::*)(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>), IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider*, std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>>>(void*) + 92
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 5:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libdispatch.dylib             	       0x19a01099c _dispatch_sema4_wait + 28
2   libdispatch.dylib             	       0x19a011050 _dispatch_semaphore_wait_slow + 132
3   libIlmThread.dylib            	       0x10fda6de8 IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::threadLoop(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>) + 52
4   libIlmThread.dylib            	       0x10fda70a4 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, void (IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::*)(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>), IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider*, std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>>>(void*) + 92
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 6:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libdispatch.dylib             	       0x19a01099c _dispatch_sema4_wait + 28
2   libdispatch.dylib             	       0x19a011050 _dispatch_semaphore_wait_slow + 132
3   libIlmThread.dylib            	       0x10fda6de8 IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::threadLoop(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>) + 52
4   libIlmThread.dylib            	       0x10fda70a4 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, void (IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::*)(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>), IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider*, std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>>>(void*) + 92
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 7:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libdispatch.dylib             	       0x19a01099c _dispatch_sema4_wait + 28
2   libdispatch.dylib             	       0x19a011050 _dispatch_semaphore_wait_slow + 132
3   libIlmThread.dylib            	       0x10fda6de8 IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::threadLoop(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>) + 52
4   libIlmThread.dylib            	       0x10fda70a4 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, void (IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::*)(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>), IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider*, std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>>>(void*) + 92
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 8:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libdispatch.dylib             	       0x19a01099c _dispatch_sema4_wait + 28
2   libdispatch.dylib             	       0x19a011050 _dispatch_semaphore_wait_slow + 132
3   libIlmThread.dylib            	       0x10fda6de8 IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::threadLoop(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>) + 52
4   libIlmThread.dylib            	       0x10fda70a4 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, void (IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::*)(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>), IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider*, std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>>>(void*) + 92
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 9:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libdispatch.dylib             	       0x19a01099c _dispatch_sema4_wait + 28
2   libdispatch.dylib             	       0x19a011050 _dispatch_semaphore_wait_slow + 132
3   libIlmThread.dylib            	       0x10fda6de8 IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::threadLoop(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>) + 52
4   libIlmThread.dylib            	       0x10fda70a4 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, void (IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::*)(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>), IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider*, std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>>>(void*) + 92
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 10:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libdispatch.dylib             	       0x19a01099c _dispatch_sema4_wait + 28
2   libdispatch.dylib             	       0x19a011050 _dispatch_semaphore_wait_slow + 132
3   libIlmThread.dylib            	       0x10fda6de8 IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::threadLoop(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>) + 52
4   libIlmThread.dylib            	       0x10fda70a4 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, void (IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::*)(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>), IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider*, std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>>>(void*) + 92
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 11:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libdispatch.dylib             	       0x19a01099c _dispatch_sema4_wait + 28
2   libdispatch.dylib             	       0x19a011050 _dispatch_semaphore_wait_slow + 132
3   libIlmThread.dylib            	       0x10fda6de8 IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::threadLoop(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>) + 52
4   libIlmThread.dylib            	       0x10fda70a4 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, void (IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider::*)(std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>), IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolProvider*, std::__1::shared_ptr<IlmThread_3_1::(anonymous namespace)::DefaultThreadPoolData>>>(void*) + 92
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 12:: caulk.messenger.shared:17
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   caulk                         	       0x1a37fb024 caulk::semaphore::timed_wait(double) + 212
2   caulk                         	       0x1a37faed8 caulk::concurrent::details::worker_thread::run() + 36
3   caulk                         	       0x1a37fabc8 void* caulk::thread_proxy<std::__1::tuple<caulk::thread::attributes, void (caulk::concurrent::details::worker_thread::*)(), std::__1::tuple<caulk::concurrent::details::worker_thread*>>>(void*) + 96
4   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
5   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 13:: com.apple.audio.IOThread.client
0   libsystem_kernel.dylib        	       0x19a17ff34 mach_msg2_trap + 8
1   libsystem_kernel.dylib        	       0x19a192260 mach_msg2_internal + 80
2   libsystem_kernel.dylib        	       0x19a188b98 mach_msg_overwrite + 604
3   libsystem_kernel.dylib        	       0x19a1802b0 mach_msg + 24
4   CoreAudio                     	       0x19c5ac634 HALB_MachPort::SendSimpleMessageWithSimpleReply(unsigned int, unsigned int, int, int&, bool, unsigned int) + 104
5   CoreAudio                     	       0x19c499d24 HALC_ProxyIOContext::IOWorkLoop() + 3516
6   CoreAudio                     	       0x19c49888c invocation function for block in HALC_ProxyIOContext::HALC_ProxyIOContext(unsigned int, unsigned int) + 116
7   CoreAudio                     	       0x19c5fb574 HALB_IOThread::Entry(void*) + 88
8   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
9   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 14:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libc++.1.dylib                	       0x19a0e8ef0 std::__1::condition_variable::wait(std::__1::unique_lock<std::__1::mutex>&) + 28
3   libOpenImageIO_Util.dylib     	       0x1101e3904 OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()::operator()() const + 164
4   libOpenImageIO_Util.dylib     	       0x1101e3768 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()>>(void*) + 52
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 15:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libc++.1.dylib                	       0x19a0e8ef0 std::__1::condition_variable::wait(std::__1::unique_lock<std::__1::mutex>&) + 28
3   libOpenImageIO_Util.dylib     	       0x1101e3904 OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()::operator()() const + 164
4   libOpenImageIO_Util.dylib     	       0x1101e3768 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()>>(void*) + 52
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 16:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libc++.1.dylib                	       0x19a0e8ef0 std::__1::condition_variable::wait(std::__1::unique_lock<std::__1::mutex>&) + 28
3   libOpenImageIO_Util.dylib     	       0x1101e3904 OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()::operator()() const + 164
4   libOpenImageIO_Util.dylib     	       0x1101e3768 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()>>(void*) + 52
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 17:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libc++.1.dylib                	       0x19a0e8ef0 std::__1::condition_variable::wait(std::__1::unique_lock<std::__1::mutex>&) + 28
3   libOpenImageIO_Util.dylib     	       0x1101e3904 OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()::operator()() const + 164
4   libOpenImageIO_Util.dylib     	       0x1101e3768 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()>>(void*) + 52
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 18:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libc++.1.dylib                	       0x19a0e8ef0 std::__1::condition_variable::wait(std::__1::unique_lock<std::__1::mutex>&) + 28
3   libOpenImageIO_Util.dylib     	       0x1101e3904 OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()::operator()() const + 164
4   libOpenImageIO_Util.dylib     	       0x1101e3768 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()>>(void*) + 52
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 19:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libc++.1.dylib                	       0x19a0e8ef0 std::__1::condition_variable::wait(std::__1::unique_lock<std::__1::mutex>&) + 28
3   libOpenImageIO_Util.dylib     	       0x1101e3904 OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()::operator()() const + 164
4   libOpenImageIO_Util.dylib     	       0x1101e3768 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()>>(void*) + 52
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 20:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libc++.1.dylib                	       0x19a0e8ef0 std::__1::condition_variable::wait(std::__1::unique_lock<std::__1::mutex>&) + 28
3   libOpenImageIO_Util.dylib     	       0x1101e3904 OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()::operator()() const + 164
4   libOpenImageIO_Util.dylib     	       0x1101e3768 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()>>(void*) + 52
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 21:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libc++.1.dylib                	       0x19a0e8ef0 std::__1::condition_variable::wait(std::__1::unique_lock<std::__1::mutex>&) + 28
3   libOpenImageIO_Util.dylib     	       0x1101e3904 OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()::operator()() const + 164
4   libOpenImageIO_Util.dylib     	       0x1101e3768 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()>>(void*) + 52
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 22:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libc++.1.dylib                	       0x19a0e8ef0 std::__1::condition_variable::wait(std::__1::unique_lock<std::__1::mutex>&) + 28
3   libOpenImageIO_Util.dylib     	       0x1101e3904 OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()::operator()() const + 164
4   libOpenImageIO_Util.dylib     	       0x1101e3768 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()>>(void*) + 52
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 23:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libc++.1.dylib                	       0x19a0e8ef0 std::__1::condition_variable::wait(std::__1::unique_lock<std::__1::mutex>&) + 28
3   libOpenImageIO_Util.dylib     	       0x1101e3904 OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()::operator()() const + 164
4   libOpenImageIO_Util.dylib     	       0x1101e3768 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()>>(void*) + 52
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 24:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libc++.1.dylib                	       0x19a0e8ef0 std::__1::condition_variable::wait(std::__1::unique_lock<std::__1::mutex>&) + 28
3   libOpenImageIO_Util.dylib     	       0x1101e3904 OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()::operator()() const + 164
4   libOpenImageIO_Util.dylib     	       0x1101e3768 void* std::__1::__thread_proxy[abi:v15006]<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct>>, OpenImageIO_v2_4::thread_pool::Impl::set_thread(int)::'lambda'()>>(void*) + 52
5   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
6   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 25:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libopenblas.0.dylib           	       0x28435d930 blas_thread_server + 360
3   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
4   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 26:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libopenblas.0.dylib           	       0x28435d930 blas_thread_server + 360
3   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
4   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 27:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libopenblas.0.dylib           	       0x28435d930 blas_thread_server + 360
3   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
4   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 28:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libopenblas.0.dylib           	       0x28435d930 blas_thread_server + 360
3   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
4   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 29:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libopenblas.0.dylib           	       0x28435d930 blas_thread_server + 360
3   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
4   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 30:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libopenblas.0.dylib           	       0x28435d930 blas_thread_server + 360
3   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
4   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 31:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libopenblas.0.dylib           	       0x28435d930 blas_thread_server + 360
3   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
4   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 32:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libopenblas.0.dylib           	       0x28435d930 blas_thread_server + 360
3   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
4   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 33:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libopenblas.0.dylib           	       0x28435d930 blas_thread_server + 360
3   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
4   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 34:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libopenblas.0.dylib           	       0x28435d930 blas_thread_server + 360
3   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
4   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 35:
0   libsystem_kernel.dylib        	       0x19a183730 __psynch_cvwait + 8
1   libsystem_pthread.dylib       	       0x19a1c0574 _pthread_cond_wait + 1232
2   libopenblas.0.dylib           	       0x28435d930 blas_thread_server + 360
3   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
4   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 36:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libtbb.dylib                  	       0x10fdd5ffc rml::internal::thread_monitor::commit_wait(rml::internal::thread_monitor::cookie&) + 64
2   libtbb.dylib                  	       0x10fdd5bb4 tbb::internal::rml::private_worker::run() + 420
3   libtbb.dylib                  	       0x10fdd5a04 tbb::internal::rml::private_worker::thread_routine(void*) + 12
4   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
5   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 37:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libtbb.dylib                  	       0x10fdd5ffc rml::internal::thread_monitor::commit_wait(rml::internal::thread_monitor::cookie&) + 64
2   libtbb.dylib                  	       0x10fdd5bb4 tbb::internal::rml::private_worker::run() + 420
3   libtbb.dylib                  	       0x10fdd5a04 tbb::internal::rml::private_worker::thread_routine(void*) + 12
4   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
5   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 38:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libtbb.dylib                  	       0x10fdd5ffc rml::internal::thread_monitor::commit_wait(rml::internal::thread_monitor::cookie&) + 64
2   libtbb.dylib                  	       0x10fdd5bb4 tbb::internal::rml::private_worker::run() + 420
3   libtbb.dylib                  	       0x10fdd5a04 tbb::internal::rml::private_worker::thread_routine(void*) + 12
4   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
5   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 39:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libtbb.dylib                  	       0x10fdd5ffc rml::internal::thread_monitor::commit_wait(rml::internal::thread_monitor::cookie&) + 64
2   libtbb.dylib                  	       0x10fdd5bb4 tbb::internal::rml::private_worker::run() + 420
3   libtbb.dylib                  	       0x10fdd5a04 tbb::internal::rml::private_worker::thread_routine(void*) + 12
4   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
5   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 40:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libtbb.dylib                  	       0x10fdd5ffc rml::internal::thread_monitor::commit_wait(rml::internal::thread_monitor::cookie&) + 64
2   libtbb.dylib                  	       0x10fdd5bb4 tbb::internal::rml::private_worker::run() + 420
3   libtbb.dylib                  	       0x10fdd5a04 tbb::internal::rml::private_worker::thread_routine(void*) + 12
4   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
5   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 41:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libtbb.dylib                  	       0x10fdd5ffc rml::internal::thread_monitor::commit_wait(rml::internal::thread_monitor::cookie&) + 64
2   libtbb.dylib                  	       0x10fdd5bb4 tbb::internal::rml::private_worker::run() + 420
3   libtbb.dylib                  	       0x10fdd5a04 tbb::internal::rml::private_worker::thread_routine(void*) + 12
4   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
5   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 42:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libtbb.dylib                  	       0x10fdd5ffc rml::internal::thread_monitor::commit_wait(rml::internal::thread_monitor::cookie&) + 64
2   libtbb.dylib                  	       0x10fdd5bb4 tbb::internal::rml::private_worker::run() + 420
3   libtbb.dylib                  	       0x10fdd5a04 tbb::internal::rml::private_worker::thread_routine(void*) + 12
4   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
5   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 43:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libtbb.dylib                  	       0x10fdd5ffc rml::internal::thread_monitor::commit_wait(rml::internal::thread_monitor::cookie&) + 64
2   libtbb.dylib                  	       0x10fdd5bb4 tbb::internal::rml::private_worker::run() + 420
3   libtbb.dylib                  	       0x10fdd5a04 tbb::internal::rml::private_worker::thread_routine(void*) + 12
4   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
5   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 44:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libtbb.dylib                  	       0x10fdd5ffc rml::internal::thread_monitor::commit_wait(rml::internal::thread_monitor::cookie&) + 64
2   libtbb.dylib                  	       0x10fdd5bb4 tbb::internal::rml::private_worker::run() + 420
3   libtbb.dylib                  	       0x10fdd5a04 tbb::internal::rml::private_worker::thread_routine(void*) + 12
4   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
5   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 45:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libtbb.dylib                  	       0x10fdd5ffc rml::internal::thread_monitor::commit_wait(rml::internal::thread_monitor::cookie&) + 64
2   libtbb.dylib                  	       0x10fdd5bb4 tbb::internal::rml::private_worker::run() + 420
3   libtbb.dylib                  	       0x10fdd5a04 tbb::internal::rml::private_worker::thread_routine(void*) + 12
4   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
5   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 46:
0   libsystem_kernel.dylib        	       0x19a17feb0 semaphore_wait_trap + 8
1   libtbb.dylib                  	       0x10fdd5ffc rml::internal::thread_monitor::commit_wait(rml::internal::thread_monitor::cookie&) + 64
2   libtbb.dylib                  	       0x10fdd5bb4 tbb::internal::rml::private_worker::run() + 420
3   libtbb.dylib                  	       0x10fdd5a04 tbb::internal::rml::private_worker::thread_routine(void*) + 12
4   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
5   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 47:: com.apple.NSEventThread
0   libsystem_kernel.dylib        	       0x19a17ff34 mach_msg2_trap + 8
1   libsystem_kernel.dylib        	       0x19a192260 mach_msg2_internal + 80
2   libsystem_kernel.dylib        	       0x19a188b98 mach_msg_overwrite + 604
3   libsystem_kernel.dylib        	       0x19a1802b0 mach_msg + 24
4   CoreFoundation                	       0x19a29e754 __CFRunLoopServiceMachPort + 160
5   CoreFoundation                	       0x19a29d034 __CFRunLoopRun + 1208
6   CoreFoundation                	       0x19a29c428 CFRunLoopRunSpecific + 612
7   AppKit                        	       0x19d5edf54 _NSEventThread + 172
8   libsystem_pthread.dylib       	       0x19a1bffa8 _pthread_start + 148
9   libsystem_pthread.dylib       	       0x19a1bada0 thread_start + 8

Thread 48:
0   libsystem_pthread.dylib       	       0x19a1bad8c start_wqthread + 0


Thread 0 crashed with ARM Thread State (64-bit):
    x0: 0x0000000000000000   x1: 0x00000006e0000020   x2: 0xffffffff7fffffe0   x3: 0xffffffff7fffffe0
    x4: 0xffffffff80000000   x5: 0x0000000000000020   x6: 0x0000000000000000   x7: 0x0000000000000000
    x8: 0x000000013ef1c510   x9: 0x0000000000000002  x10: 0x0000000000000000  x11: 0x0000000000000002
   x12: 0x0000000169803f84  x13: 0x0000000000000017  x14: 0x0000000169800000  x15: 0x0000000000000000
   x16: 0x000000019a1ee640  x17: 0x00000001f9d70c88  x18: 0x0000000000000000  x19: 0x0000600002270d28
   x20: 0x0000000760000040  x21: 0x0000000000000002  x22: 0x000000010c6bc780  x23: 0x000000010c6bc760
   x24: 0x0000000000000000  x25: 0x000000010c6bc000  x26: 0x00000000000000c3  x27: 0x0000000000000003
   x28: 0x000000010c6bc9f0   fp: 0x000000016ee32a80   lr: 0x0000000105d193f8
    sp: 0x000000016ee32a60   pc: 0x000000019a1ee848 cpsr: 0xa0001000
   far: 0xffffffff7fffffe0  esr: 0x92000044 (Data Abort) byte write Translation fault

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       0x283a04000 -        0x283a47fff _ufuncs_cxx.cpython-310-darwin.so (*) <e38c5413-da33-322a-8cd4-7841570179c4> /Users/USER/*/_ufuncs_cxx.cpython-310-darwin.so
       0x283e68000 -        0x283ebbfff _specfun.cpython-310-darwin.so (*) <986a8abd-e0f7-3590-8a48-a99375572ad8> /Users/USER/*/_specfun.cpython-310-darwin.so
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       0x29baa8000 -        0x29bc3bfff _sqlite3.cpython-310-darwin.so (*) <3ebb37da-563a-3c4f-a72d-e88308be3a94> /Applications/Blender.app/Contents/Resources/4.0/python/lib/python3.10/lib-dynload/_sqlite3.cpython-310-darwin.so
       0x2839a8000 -        0x2839b3fff _elementtree.cpython-310-darwin.so (*) <584ca3f3-3063-3215-8c00-bc81b4bfb0d2> /Applications/Blender.app/Contents/Resources/4.0/python/lib/python3.10/lib-dynload/_elementtree.cpython-310-darwin.so
       0x283ed0000 -        0x283ef7fff pyexpat.cpython-310-darwin.so (*) <44d0dcd0-7010-39d1-8360-2cf13b17177a> /Applications/Blender.app/Contents/Resources/4.0/python/lib/python3.10/lib-dynload/pyexpat.cpython-310-darwin.so
       0x2823a8000 -        0x2823affff _mio_utils.cpython-310-darwin.so (*) <dd53079c-bb97-34de-b715-34473da190f6> /Users/USER/*/_mio_utils.cpython-310-darwin.so
       0x283e00000 -        0x283e23fff _mio5_utils.cpython-310-darwin.so (*) <c7ff71f6-189a-3e69-bb62-3465fda739b8> /Users/USER/*/_mio5_utils.cpython-310-darwin.so
       0x2839c8000 -        0x2839d7fff _streams.cpython-310-darwin.so (*) <7f3c5c60-eb50-3e62-87ae-5e47b9b490f7> /Users/USER/*/_streams.cpython-310-darwin.so
       0x283740000 -        0x283743fff mmap.cpython-310-darwin.so (*) <2995f06f-6c67-3069-9497-fd67e672e0eb> /Applications/Blender.app/Contents/Resources/4.0/python/lib/python3.10/lib-dynload/mmap.cpython-310-darwin.so
       0x2839e4000 -        0x2839ebfff _csv.cpython-310-darwin.so (*) <d18304eb-9781-35f5-ac4f-5841e48ec1f5> /Applications/Blender.app/Contents/Resources/4.0/python/lib/python3.10/lib-dynload/_csv.cpython-310-darwin.so
       0x19a1eb000 -        0x19a1f1ffb libsystem_platform.dylib (*) <6d458354-3c39-3f35-a3bb-d01a78817b4a> /usr/lib/system/libsystem_platform.dylib
       0x199e62000 -        0x199ef0587 dyld (*) <49204446-242b-3d1e-9704-32f8ac99723e> /usr/lib/dyld
       0x19a17f000 -        0x19a1b8fe7 libsystem_kernel.dylib (*) <a57217d4-b72e-3092-a6e4-3d9c1885fe92> /usr/lib/system/libsystem_kernel.dylib
       0x19a00c000 -        0x19a053fff libdispatch.dylib (*) <9897030f-75d3-374b-8787-322d3d72e096> /usr/lib/system/libdispatch.dylib
       0x19a1b9000 -        0x19a1c5fff libsystem_pthread.dylib (*) <1f30fb9a-bdf9-32db-a709-8417666a7e45> /usr/lib/system/libsystem_pthread.dylib
       0x1a37f9000 -        0x1a3821fff com.apple.audio.caulk (1.0) <94eafeb1-517c-3d98-8d0d-9c350f0eb986> /System/Library/PrivateFrameworks/caulk.framework/Versions/A/caulk
       0x19c2bd000 -        0x19c950fff com.apple.audio.CoreAudio (5.0) <86c35c01-57f0-3e1a-851e-201b9e4f75f9> /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio
       0x19a0d6000 -        0x19a162ff7 libc++.1.dylib (*) <3ee92404-8fc3-374b-a598-d5c9a8cd64b5> /usr/lib/libc++.1.dylib
       0x19a21f000 -        0x19a6f8fff com.apple.CoreFoundation (6.9) <982f755b-2044-397a-8823-57ddc4341cf3> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
       0x19d48a000 -        0x19e399fff com.apple.AppKit (6.9) <ab4a163e-3a53-3fde-a88d-130759291adb> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
               0x0 - 0xffffffffffffffff ??? (*) <00000000-0000-0000-0000-000000000000> ???

External Modification Summary:
  Calls made by other processes targeting this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by all processes on this machine:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=1.4G resident=0K(0%) swapped_out_or_unallocated=1.4G(100%)
Writable regions: Total=21.7G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=21.7G(100%)

                                VIRTUAL   REGION 
REGION TYPE                        SIZE    COUNT (non-coalesced) 
===========                     =======  ======= 
Accelerate framework               128K        1 
Activity Tracing                   256K        1 
CG backing stores                 1344K        4 
CG image                           320K       10 
ColorSync                          192K        8 
CoreAnimation                      144K        9 
CoreGraphics                        32K        2 
CoreUI image data                  592K        9 
Foundation                          16K        1 
Kernel Alloc Once                   32K        1 
MALLOC                            19.9G     1128 
MALLOC guard page                  192K        9 
MALLOC_LARGE (reserved)           60.6M        1         reserved VM address space (unallocated)
MALLOC_MEDIUM (reserved)           1.0G       12         reserved VM address space (unallocated)
MALLOC_NANO (reserved)           256.0M        1         reserved VM address space (unallocated)
STACK GUARD                        784K       49 
Stack                             65.5M       50 
Stack Guard                         16K        1 
VM_ALLOCATE                       39.7M       63 
VM_ALLOCATE (reserved)           352.0M        2         reserved VM address space (unallocated)
__AUTH                             718K      182 
__AUTH_CONST                      13.5M      348 
__CTF                               824        1 
__DATA                            25.8M      487 
__DATA_CONST                      26.2M      486 
__DATA_DIRTY                       796K      119 
__FONT_DATA                        2352        1 
__LINKEDIT                       921.6M      139 
__OBJC_RO                         66.4M        1 
__OBJC_RW                         2012K        1 
__TEXT                           559.4M      504 
dyld private memory                656K        4 
mapped file                      350.4M       30 
shared memory                      912K       15 
===========                     =======  ======= 
TOTAL                             23.6G     3680 
TOTAL, minus reserved VM space    21.9G     3680 



-----------
Full Report
-----------

{"app_name":"Blender","timestamp":"2023-12-04 12:45:49.00 -0700","app_version":"4.0.1","slice_uuid":"e6e8b13a-1909-3730-9e63-7882b4b103af","build_version":"4.0.1 2023-11-17","platform":1,"bundleID":"org.blenderfoundation.blender","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 13.6.2 (22G320)","roots_installed":0,"name":"Blender","incident_id":"9DBB44A7-1B0E-4670-95ED-F26F5678887E"}
{
  "uptime" : 96000,
  "procRole" : "Background",
  "version" : 2,
  "userID" : 28751,
  "deployVersion" : 210,
  "modelCode" : "Mac14,5",
  "coalitionID" : 723,
  "osVersion" : {
    "train" : "macOS 13.6.2",
    "build" : "22G320",
    "releaseType" : "User"
  },
  "captureTime" : "2023-12-04 12:45:48.5281 -0700",
  "incident" : "9DBB44A7-1B0E-4670-95ED-F26F5678887E",
  "pid" : 94717,
  "translated" : false,
  "cpuType" : "ARM-64",
  "roots_installed" : 0,
  "bug_type" : "309",
  "procLaunch" : "2023-12-04 12:41:08.9440 -0700",
  "procStartAbsTime" : 2308307456557,
  "procExitAbsTime" : 2315017308006,
  "procName" : "Blender",
  "procPath" : "\/Applications\/Blender.app\/Contents\/MacOS\/Blender",
  "bundleInfo" : {"CFBundleShortVersionString":"4.0.1","CFBundleVersion":"4.0.1 2023-11-17","CFBundleIdentifier":"org.blenderfoundation.blender"},
  "storeInfo" : {"deviceIdentifierForVendor":"D48508A5-0244-5E9F-A936-3A70762A948E","thirdParty":true},
  "parentProc" : "zsh",
  "parentPid" : 33990,
  "coalitionName" : "com.apple.Terminal",
  "crashReporterKey" : "F7404F57-7BF0-7108-6B17-6A85C29106A1",
  "responsiblePid" : 857,
  "responsibleProc" : "Terminal",
  "codeSigningID" : "org.blenderfoundation.blender",
  "codeSigningTeamID" : "68UA947AUU",
  "codeSigningFlags" : 570491649,
  "codeSigningValidationCategory" : 6,
  "codeSigningTrustLevel" : 0,
  "wakeTime" : 11721,
  "sleepWakeUUID" : "1A32D710-3503-47E6-9262-DE5E885AEA98",
  "sip" : "enabled",
  "vmRegionInfo" : "0xffffffff7fffffe0 is not in any region.  Bytes after previous region: 18446638517908930529  \n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      MALLOC_NANO (reserved)   600018000000-600020000000 [128.0M] rw-\/rwx SM=NUL  ...(unallocated)\n--->  \n      UNUSED SPACE AT END",
  "exception" : {"codes":"0x0000000000000001, 0xffffffff7fffffe0","rawCodes":[1,-2147483680],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0xffffffff7fffffe0"},
  "termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"exc handler","byPid":94717},
  "ktriageinfo" : "VM - (arg = 0x0) pmap_enter retried due to resource shortage\nVM - (arg = 0x0) pmap_enter retried due to resource shortage\nVM - (arg = 0x0) pmap_enter retried due to resource shortage\nVM - (arg = 0x0) pmap_enter retried due to resource shortage\nVM - (arg = 0x0) pmap_enter retried due to resource shortage\n",
  "vmregioninfo" : "0xffffffff7fffffe0 is not in any region.  Bytes after previous region: 18446638517908930529  \n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      MALLOC_NANO (reserved)   600018000000-600020000000 [128.0M] rw-\/rwx SM=NUL  ...(unallocated)\n--->  \n      UNUSED SPACE AT END",
  "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
  "faultingThread" : 0,
  "threads" : [{"triggered":true,"id":1780412,"threadState":{"x":[{"value":0},{"value":29527900192},{"value":18446744071562067936},{"value":18446744071562067936},{"value":18446744071562067968},{"value":32},{"value":0},{"value":0},{"value":5350999312},{"value":2},{"value":0},{"value":2},{"value":6064979844},{"value":23},{"value":6064963584},{"value":0},{"value":6880683584,"symbolLocation":0,"symbol":"_platform_memmove"},{"value":8486587528},{"value":0},{"value":105553152380200},{"value":31675383872},{"value":2},{"value":4503357312,"symbolLocation":32,"symbol":"DST"},{"value":4503357280,"symbolLocation":0,"symbol":"DST"},{"value":0},{"value":4503355392,"symbolLocation":8,"symbol":"blender::deg::SequencerComponentNode::typeinfo"},{"value":195},{"value":3},{"value":4503357936,"symbolLocation":656,"symbol":"DST"}],"flavor":"ARM_THREAD_STATE64","lr":{"value":4392588280},"cpsr":{"value":2684358656},"fp":{"value":6155348608},"sp":{"value":6155348576},"esr":{"value":2449473604,"description":"(Data Abort) byte write Translation fault"},"pc":{"value":6880684104,"matchesCrashFrame":1},"far":{"value":18446744071562067936}},"queue":"com.apple.main-thread","frames":[{"imageOffset":14408,"symbol":"_platform_memmove","symbolLocation":520,"imageIndex":138},{"imageOffset":81056760,"symbol":"blender::gpu::MTLStorageBuf::update(void const*)","symbolLocation":296,"imageIndex":0},{"imageOffset":10738532,"symbol":"blender::draw::Manager::end_sync()","symbolLocation":52,"imageIndex":0},{"imageOffset":10750888,"symbol":"DRW_draw_render_loop_ex","symbolLocation":936,"imageIndex":0},{"imageOffset":24533840,"symbol":"view3d_main_region_draw","symbolLocation":220,"imageIndex":0},{"imageOffset":14624124,"symbol":"ED_region_do_draw(bContext*, 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Shorter log from Blender proper

Switching to fully guarded memory allocator.
Blender 4.0.1
Build: 2023-11-17 00:31:48 Darwin release
argv[0] = /Applications/Blender.app/Contents/MacOS/Blender
argv[1] = --debug
argv[2] = --debug-cycles
Read prefs: "/Users/treddy/Library/Application Support/Blender/4.0/config/userpref.blend"
Info: Imported '/Users/treddy/Desktop/LDRD_DR_host_virus_slide_decks/Annual_Review_2023/Task_1_MD/render_movie_alchembed/synthetic_repro_brady/synthetic_repro.gro' as NewTrajectory with 100 frames from '/Users/treddy/Desktop/LDRD_DR_host_virus_slide_decks/Annual_Review_2023/Task_1_MD/render_movie_alchembed/synthetic_repro_brady/synthetic_repro.xtc'.

Writing: /var/folders/3g/r3rf41qx58b5j2hbkdpzw3cc000w2g/T/blender.crash.txt

Dec 04 '23 19:12 tylerjereddy

Okay I should have tried it earlier, but I was able to reproduce the crash by choosing a different style on import.

Given the large size of the system, the default style Preset ends up producing the crash. Looking at logs, MN / Blender successfully imports the universe into the scene and sets everything up, but crashes when attempting to build the geometry for the style.

If you import and choose the default style to the Spheres (in the import panel) then it should import successfully.

This particular crash isn't really a 'bug', but rather Blender trying to build too much geometry to the point where it runs out of memory and crashes. There isn't a way to guard against that using Geometry Nodes.

For a very large system such as this, the non-EEVEE spheres style uses Point Cloud rendering and is only visible in the Cycles rendering engine. It is a slight limitation, but it means that Cycles can handled hundreds of millions of atoms.

For this it is just a matter of choosing the appropriate style for the size of the system (this needs to be emphasized by me more in the documentation). Previously the default style was spheres (to guard against exactly this kind of crash when import very large systems) and I think I will change the default back to spheres.

Dec 05 '23 01:12 BradyAJohnston

Ah, very cool, I adjusted the title of the issue to reflect a "doc" instead of "bug" status.

I tried reproducing the multi-frame render memory leak after switching to spheres, and I don't see it, so that's promising re: my original problem, maybe a little better in 4.0.1 than 3.6.x for that issue then. I'll have to try the real system next of course, but that's a good sign.

Dec 05 '23 04:12 tylerjereddy

@tylerjereddy good to know it's working, and that the memory leak issue may have resolved itself. Keep my updated!

Dec 05 '23 05:12 BradyAJohnston

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DOC: Blender 4.0.1 default spheres for large systems

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